CI01000092_02395791_02407508


Basic Information

Item Value
gene id CI01000092_02395791_02407508
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000092
NCBI id null
chromosome length 5370156
location 2395601 ~ 2407642 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000092_02395791_02407508.mRNA
CCATATATCAGTGCAGAGGTCTGTCGTGTACGGATGACAAAATTCCCTGACACTGTCACGATATAGCCTCTTGTGTCAGTGCAGTGGTTTGTCATGTACAGCAGACAAAATGCCCAGCACCTACACGACATAGCCTCCTGTACAGAAGACAAAATTCCCTGTGCTCACCTCACACGTTCTAAGCAGCCCCATGTCTCAGTGCAGTGTTCAGTCATGTACAGAAGAGCAGATGCTTGGCACTCCGGCTAAGACCGGGCTATGTGCTTTAGTCACTTTCTACTTCCTTAAGCTGAACGGTGTTCATGACATCATCTTGGCCCTCTGCCAGCTTGATGTCTGGTGTTTCAACAAGGTCTGGTACCTGGCCGAAGCGAGAAATGGATTCCTGATGGTCATCATGGTCTCTCTAGCAGGAAAACTGTCATTTTGTAGAAATACTATTGATCACTGTTTATGTGAGCACATGGCATTGGTTCAGTTAGCATGTGGAGATACATCTGTTAATAATATTGTAGGACTTCTCTCTGCTTTTCTTATCCCAACTGCAGACTTTATTCTCATTACTGTTTCCTATGTTGTGATTTTCTCCTCTGTGTTTAGATCTGACCATGAGAATGCCAAGCTGCTTGTGGACAGATTGCACCAGAAAGGCATTCTTCTCACAAACAGTATTTCAGAGTTGCTAGCAGTTATTGCATGCAATACTACCACCAAGCACTGCATGTATCACACCTGTGCTAAGTGCTGCTACAACGAGATTGAGTTTGAAGGACCTCTGGAGGATACTGAAATTACATGGCAGCAGTGGTCCAGAGTAGTCACATCTGAAGAAGAGAAAACCTTCACTAACTTTGCAAAAATCGATGAAAATGTCATCCCTGTGATGGCAGACAGTGACCTAGTAAAGTACATCCCCAAAGCTGGAGACAGAATCTCTACTGTGGCCTTCTGTAGACAAGCCAGTGTATCACTTCAGGCACAGTCCTGGAAAGAATCCATACTGTCAAGACTACGACATAGACTGTCTTCTGGGAATGACAGTGTACCTGCAAAGAAAAGTTCTTCATGGGTAGGAAACACAAGTACCAAAAAGAAACAGAGACACATTGAGCTAGGATGGATGGATTTTGATGAGAAAGCAGCGGTTCAAACAAGTGAAAGCAATAAATGGTGGAGGAACGAGACATCTCTGTGTTGACAA
>TU346506
AAATACATGTGCTTACATAGACCATGAGAATGCCAAGCTGCTTGTGGACAGATTGCACCAGAAAGGCATTCTTCTCACAAACAGTATTTCAGAGTTGCTAGCAGTTATTGCATGCAATACTACCACCAAGCACTGCATGTATCACACCTGTGCTAAGTGCTGCTACAACGAGATTGAGTTTGAAGGACCTCTGGAGGATACTGAAATTACATGGCAGCAGTGGTCCAGAGTAGTCACATCTGAAGAAGAGAAAACCTTCACTAACTTTGCAAAAGTCACACAAAGTGTGACTGATTGTACAGTGATCAAAGGTTAAAAAGAATGTGAACATGAACAGTGAATGATAGCAAAGCAGTGTCCTAATGCACAAAGATAAATGATTATTCCCACATGTACATAGTAACAACGCTAAGGAACATCATT
>TU346508
TGACAGTGTACCTGCAAAGAAAAGTTCTTCATGGGTAGGAAACACAAGTACCAAAAAGAAACAGAGACACATTGAGCTAGGATGGATGGATTTTGATGAGAAAGCAGCGGTTCAAACAAGTGAAAGCAATAAATGGTGGAGGAACGAGACATCTCTGTGTTGACAAACAAAACAGTGAAATATTTGAAATCTGAGGATGAAAGTCTGTTTTTTCCAAATGATTATTGAGCAAAACAAAAAAATGGCTGACCGCACACTGAATCCAAAAAAGACTGAAGTCTAGAAAAATACAAAATT

Function

NR:

description
hypothetical protein EH28_00535

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000092_02395791_02407508.mRNA False 1201 mRNA 0.44 5 2395601 2407511
TU346506 False 423 lncRNA 0.40 1 2406691 2407113
TU346508 True 297 lncRNA 0.36 1 2407346 2407642

Neighbor

gene id symbol gene type direction distance location
CI01000092_02358901_02363225 NA coding upstream 31139 2357903 ~ 2364462 (+)
CI01000092_02279826_02285934 NA coding upstream 109522 2276512 ~ 2286079 (+)
CI01000092_02186791_02187942 NA coding upstream 207659 2186791 ~ 2187942 (+)
CI01000092_01989763_02003920 PGM2L1 coding upstream 391471 1989763 ~ 2004130 (+)
CI01000092_01985290_01986640 NA coding upstream 408914 1985290 ~ 1986687 (+)
CI01000092_02411552_02412283 NA coding downstream 4041 2411552 ~ 2413511 (+)
CI01000092_02418597_02419541 NA coding downstream 10897 2418408 ~ 2419996 (+)
CI01000092_02470059_02471839 OR112-1 coding downstream 61841 2469352 ~ 2471951 (+)
CI01000092_02661524_02662121 NA coding downstream 253872 2661383 ~ 2662183 (+)
CI01000092_02721458_02724152 NA coding downstream 313882 2721393 ~ 2724152 (+)
G304966 NA non-coding upstream 1233 2394130 ~ 2394368 (+)
G304963 NA non-coding upstream 14058 2381258 ~ 2381543 (+)
G304955 NA non-coding upstream 44678 2350720 ~ 2350923 (+)
G304934 NA non-coding upstream 83960 2311399 ~ 2311641 (+)
G304930 NA non-coding upstream 95082 2300294 ~ 2300519 (+)
G304972 NA non-coding downstream 695 2408206 ~ 2408820 (+)
G304973 NA non-coding downstream 1785 2409296 ~ 2409733 (+)
G304980 NA non-coding downstream 33466 2440977 ~ 2441268 (+)
G304984 NA non-coding downstream 40875 2448386 ~ 2448653 (+)
G304938 NA other upstream 77367 2317792 ~ 2318234 (+)
G303768 NA other upstream 1079078 1315443 ~ 1316523 (+)
G305584 NA other downstream 1259797 3667308 ~ 3667965 (+)
G305596 NA other downstream 1318836 3726347 ~ 3863135 (+)
G304969 NA non-coding upstream 1129 2405138 ~ 2405562 (+)
G304968 NA non-coding upstream 4186 2402195 ~ 2402505 (+)
G304967 NA non-coding upstream 10565 2395910 ~ 2396126 (+)

Expression


Co-expression Network