CI01000092_03080030_03082866 (PCP4)


Basic Information

Item Value
gene id CI01000092_03080030_03082866
gene name PCP4
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000092
NCBI id null
chromosome length 5370156
location 3079562 ~ 3083624 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000092_03080030_03082866.mRNA
CTATATAGGGAAGCTGTACAGGTGTCTTCAGCCAATGACAGCATGTAATGTCGGTCTTAAGAGAGAAAGCACGTTAATACCAAAGGGTATGGTAAAAATATATTAAACAAAGTAAATACTTTCTTGGGAATCATTAAATTGGGGAATTACATGTGATATTCTCATAAGTACATGCACTCAGTACAAGTACTCACTAAAGTTATAAACTCGCAATTGTCATAACTGTGAGATAAATAATCACTATTACCTTTTTTTATTTGTTTATATCCCGCAATTTTGAAGTTTTTTGCAAACTCAAGATATAAACTCGCAATTCTGAGAATTTTTTTTTGAATTGCGAGTTATAAACTTGCAATTGTAAGTTATACAGTCCGAATTGTGAGATACAAGCTAGTGAGATATAAGCATTGACGTGTGTAAACGGAGACAGGAAGACAGTAAGAATAGCTCTCATGTATTGACTGAAACATGAGGCCTGCTCTCTCTAGAGATGCATCTAAAAAAGACGTCCCTGAGGACTTTGACATTGACATGGACGCTCCTGAAACCGAGAAGGCAGCCGTCGCTATTCAATCGCAGTTCAGGAAGTTCCAGAAGAAGAAAACTGATGAGAAGTCATAGTTGCCAGTGGACTTCTCTGTCCGTACGGCCCCATCAGGACAGCATGGTTTGATGTTGCATGTAATCGAATCCATTCTATATGGACTCAAGGAAGGGGGGATGGGAAATCAAGGTCGTAATCTGTCCATCACTGTTCTAACCTGTTATTTTACTGCTGTAACCGTGAATTCCATAGTTTATATTCATTTTGGTTCCAGCTTTATTCTCCATTCTAGCAAAGAATATCTGTCTTACTACTGATGCATGATTTTCTATTGTAACTCAAAGAGCTGGATTGCCAGCCTGTTCCTTATTTGTGAAAGCACAATATGTTTTTATTGTGAGCTGCTTACGAAATTGATTTTAGTCAGAAACCGTTTGTTAAATACTGAGCATTACATGTACATAAATATAGAGCAGAACTTTATTTTTGTTTCACACCATTAGTCTTCATCTGATGAATGCTTTAGCATACATTCTCATCCCAGCAGAGTTTTAAAAATAGCTCGTCTTTTGAAAGCCATATTGTTGAATAATTCCCAGCTTATTTTCCCGAATCCTCACTGTGTGCTCAGTACTCTTTATTGATTCATTTCTGTGTTGAATTCCATGCTGGATAAAATTGATTTGAGAGCGAGTGTTTGATTGTCTAGTTTGCTGTGGCATATCATAACATTTCTGTTCATTTTCTTCCTTTGCAAAGGATCATGGCACAAACATTAGCCAACCAAACACTCTATCTCACCTCAACTCAGTCTGAATGAAACAAGAAACTATTA

Function

symbol description
pcp4 Enables calcium ion binding activity and calmodulin binding activity. Involved in calmodulin dependent kinase signaling pathway and positive regulation of neuron differentiation. Located in cytosol and nucleus. Part of protein-containing complex. Biomarker of Huntington's disease and leiomyoma.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000092_03080030_03082866.mRNA False 1379 mRNA 0.37 2 3079562 3083624

Neighbor

gene id symbol gene type direction distance location
CI01000092_03007267_03029327 NA coding upstream 50235 3007267 ~ 3029327 (+)
CI01000092_02977237_02979350 SH3BGR coding upstream 100184 2977237 ~ 2979378 (+)
CI01000092_02958119_02966042 WRB coding upstream 113099 2958024 ~ 2966463 (+)
CI01000092_02818349_02838255 NA coding upstream 241307 2817620 ~ 2838255 (+)
CI01000092_02739990_02745224 NA coding upstream 334315 2739990 ~ 2745247 (+)
CI01000092_03329908_03348045 NA coding downstream 246284 3329908 ~ 3348319 (+)
CI01000092_03433283_03442900 GLTSCR2 coding downstream 349659 3433283 ~ 3442960 (+)
CI01000092_03478431_03479274 GJD1A coding downstream 394807 3478431 ~ 3479793 (+)
CI01000092_03532136_03542761 SIRT2 coding downstream 448512 3532136 ~ 3542883 (+)
CI01000092_03551674_03573437 NA coding downstream 468050 3551674 ~ 3573492 (+)
G305285 NA non-coding upstream 106754 2972522 ~ 2972808 (+)
G305284 NA non-coding upstream 107118 2972237 ~ 2972444 (+)
G305270 NA non-coding upstream 165182 2914079 ~ 2914380 (+)
G305265 NA non-coding upstream 178594 2900690 ~ 2900968 (+)
G305148 NA non-coding upstream 196330 2878272 ~ 2883232 (+)
G305336 NA non-coding downstream 11525 3095149 ~ 3095387 (+)
G305366 NA non-coding downstream 72045 3155669 ~ 3156083 (+)
G305376 NA non-coding downstream 100139 3183763 ~ 3183984 (+)
G305455 NA non-coding downstream 230961 3314585 ~ 3314817 (+)
G305456 NA non-coding downstream 232061 3315685 ~ 3315984 (+)
G304938 NA other upstream 761328 2317792 ~ 2318234 (+)
G303768 NA other upstream 1763039 1315443 ~ 1316523 (+)
G305584 NA other downstream 583684 3667308 ~ 3667965 (+)
G305596 NA other downstream 642723 3726347 ~ 3863135 (+)

Expression


Co-expression Network