XLOC_010907


Basic Information

Item Value
gene id XLOC_010907
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 38948644 ~ 38950147 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00022215
TGGGAACGTTGGTCATTCGTCTCTCAAGCACATAGTTAATGAAGTTCCTTCTGTTATGAGTGGTTTGCATAACACCTGGTTCCATGCCAGCTTTTGGGCTGTCCAGTTGCTGCGATACACAGGTCATGCACTCTCTCTCCCTCCTGCAGCGGGGCTCCTCAAGACATGATTAACGGCTGCTCTTTTTCCCACTCTCTCATTCTCGCTCTCTTTCTTCAGGATCCTTCCTCCTCAAAGCCAGCATTAAGTTTGTGGCCCGTGCAACTGCACATGTGTGTTCCCAGTTCCCACAAGTGAACCGCTGGGCTTGATGAGAGAGGCGGACGGCTCGGGACGGCTGGGGTGTCGTTGCTGGGGTCCCAATCGGGGCTGTAAATTCAAGCGGGGAGGGCGAGATCCTGTAAGATGAAACCCTTTTCCCTCCGTGTATCAGCAACACAGCTCGGGCCGAGACAAGAGAGAAGAAGCAGGCAGTAAATCCATTGGAGTTCACTGATAGCACTGTTTGCACAGCCACCGCCGCCTGCTTTGATCAAATCGCCGGGGGAGTGGGGGTCGTGTGTCGCTGCCAAAGGGTGTGCCAGAAGCCCCTGCAGCGGTGTCTGGCCCGCTCGGGGGCCTCTCTGCGGCCCCGTCCGCCACAGAAATGCTCACTGCTTGTGTTTCCTATCATGAGAGGAGGGCCCGAGAGAGCCCCACATGGAAACGTGCTATCCAATTGCAGCCGCGTGCTGGAATCAGCTGATCACTGCTGTGCTGGAGGTTTGGCTCACTAAAAGGTTTTAGATGACAGCTCAATTAAGACGTGGAGGCGTTTCCTGCCACCTGctatggttcacccaaaaatgaactttCTGTTATcgcccagcaagcatttttttgtttttgtttttaaaagatgtttaatCGATGTCTAAAAGACATCTAAACATTGTCCGCTTCATTGTCAGGCAAaatctgtcagtgaaaatctaaaagaCATCTACTGTAAGAACAGGCCAAAACTAgcctagtcatcaaataaacagaagtgagtgactacacatataaagtctgtctaatctgtctgtcGACTAGTCTAGTATTGGGCTATTCtgagatgtctattagattttcactgacagcccaaatttagctttgttttagtcaagctgtctatgtttaaatgtctattagatgtgTATTAAACACAGAATTGTTTGATGGGTGTTTATATATCTTCATGCcattcccagaagaaaaaaatgtggaAGAATTGAACCTTTAGTCCATTCATTAAAAGTAAATCAAACATGA
>TCONS_00021828
AAGTTTGTGGCCCGTGCAACTGCACATGTGTGTTCCCAGTTCCCACAAGTGAACCGCTGGGCTTGATGAGAGAGGCGGACGGCTCGGGACGGCTGGGGTGTCGTTGCTGGGGTCCCAATCGGGGCTGTAAATTCAAGCGGGGAGGGCGAGATCCTGTAAGATGAAACCCTTTTCCCTCCGTGTATCAGCAACACAGCTCGGGCCGAGACAAGAGAGAAGAAGCAGGCAGTAAATCCATTGGAGTTCACTGATAGCACTGTTTGCACAGCCACCGCCGCCTGCTTTGATCAAATCGCCGGGGGAGTGGGGGTCGTGTGTCGCTGCCAAAGGTCAGCTATATATTACGCTCCTAAAAGTGATTACTGAAATTCTTAACTGAAACCATTCTGCTGCCAGGGTGTGCCAGAAGCCCCTGCAGCGGTGTCTGGCCCGCTCGGGGGCCTCTCTGCGGCCCCGTCCGCCACAGAAATGCTCACTGCTTGTGTTTCCTATCATGAGAGGAGGGCCCGAGAGAGCCCCACATGGAAACGTGCTATCCAATTGCAGCCGCGTGCTGGAATCAGCTGATCACTGCTGTGCTGGAGGTTTGGCTCACTAAAAGGTTTTAGATGACAGCTCAATTAAGACGTGGAGGCGTTTCCTGCCACCTGctatggttcacccaaaaatgaactttCTGTTATcgcccagcaagcatttttttgtttttgtttttaaaagatgtttaatCGATGTCTAAAAGACATCTAAACATTGTCCGCTTCATTGTCAGGCAAaatctgtcagtgaaaatctaaaagaCATCTACTGTAAGAACAGGCCAAAACTAgcctagtcatcaaataaacagaagtgagtg

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00022215 False 1296 lncRNA 0.47 3 38948644 38950147
TCONS_00021828 True 859 lncRNA 0.51 2 38948903 38949902

Neighbor

gene id symbol gene type direction distance location
XLOC_010906 BX571839.1 coding downstream 26899 38920128 ~ 38921745 (-)
XLOC_010905 NA coding downstream 144492 38802405 ~ 38804152 (-)
XLOC_010903 eif3ea coding downstream 316675 38556836 ~ 38631969 (-)
XLOC_010904 CU855886.1 coding downstream 386000 38562527 ~ 38562644 (-)
XLOC_010902 rspo2 coding downstream 394923 38453876 ~ 38553721 (-)
XLOC_010908 NA coding upstream 49866 39000013 ~ 39024997 (-)
XLOC_010909 BX296552.2 coding upstream 79736 39029883 ~ 39109931 (-)
XLOC_010910 gdf6a coding upstream 175442 39125589 ~ 39131666 (-)
XLOC_010911 si:dkey-99n20.6 coding upstream 222695 39172842 ~ 39178979 (-)
XLOC_010912 ebag9 coding upstream 234956 39185103 ~ 39195318 (-)
XLOC_010626 CR392024.2 misc downstream 18053469 20895112 ~ 20895175 (-)
XLOC_010901 NA non-coding downstream 554086 38385808 ~ 38394558 (-)
XLOC_010899 NA non-coding downstream 606840 38198913 ~ 38341804 (-)
XLOC_010894 BX248115.1 non-coding downstream 1791523 37157005 ~ 37157121 (-)
XLOC_010917 NA non-coding upstream 662747 39612894 ~ 39625362 (-)
XLOC_010919 CR626944.1 non-coding upstream 934987 39885134 ~ 39885251 (-)
XLOC_010920 CT025588.1 non-coding upstream 1086564 40036711 ~ 40037796 (-)

Expression


Co-expression Network