CI01000092_03433283_03442900 (GLTSCR2)


Basic Information

Item Value
gene id CI01000092_03433283_03442900
gene name GLTSCR2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000092
NCBI id null
chromosome length 5370156
location 3433283 ~ 3442960 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000092_03433283_03442900.mRNA
ATGGCGGCCACCAGGAAACACAAGCGCGTGGCAGCGTCTCAGCCGGGGTTTTTGCCTTTTAAATCGGATCTGGATGGTAACAGTTTGGATATCAAACGGCGAAAGCGCGTGAACAAAAATAAGAAAAAGAACTGGAACAAATACAGTGATATACAGGATGTGGAGGAGTTTCTGGAAGACGTGCGGCTTCAGGAGAAAGCAGTCGGGGGGTTGATAGCTGAAAAACCCGACGACAGTCTCTTCTTTGTGGACACTGGTGAAAAAGACAAAGATACACAACCACAGAAGACAGTCAAGAAAGGTAAACGCTCGAAACCTTTGCGGATAGATCTAATTCTTCAGCCGGATTCCCTCATACCTCCCCCCAAAAATGTCTTGGCGTTCCAGCAGCCCAATGCTAAAAAGCAGCGGCACACGGCAGAGAAAGCAGCGAAGTTGGCGGCCATGGGAGTTGTGCCACGGAGAGAAAAGCTTCTTCAACTCCGAAGGGCCGCAGCTGCCTCTGGGCTGTCCATTAAAGAAAAACCAGTGGCCAATAATAATCCGGAAAGAGCATTTTATGACCTGTGGAGTGCAGGCAGTGAGTGGAGGCCATCTTTACACTTTCTCTTATATGTCAGTAATGTATTCAAGTGGCATAATGTTGCTCAATGTCCAACAGCACCAGAGACGGCCGATCCCTACTACCTCGAACAGACTAAGAAAAAGCTTGTCAAGAGACCAGACAGACTGAACGAGAAGCCTTCAGTTCTTCCTGCGATTGAGGTCGTCGCTCCTGGAGCCTCATACAACCCAGACTTCTTTTCTCACCAGGAACTGCTTCGTGAAGCCCATGAAGTGGAGGTGAAGAAGCTGAAAGTAGAGGAAAAGTTGAAACGTCAGCTGGCTGTGAATGAGGACGTCGCCACTAAGGAGAGCAACTTTAAAGAGCAGGTGGAGGGGTTGATTGAAGAAGGGGATATTGAACCAGAAGAGCCAGAAGGGGACACCGAAGACACAGTCATTGGGCCAACTGCAACACAGGAAAAGAAAACTGAGAAAGAGAGGAAGAAAGAGAAGGCTCAAAGGATAAAGGAGTTGCAGAGGAAGGCAGAGCGTCAGATGATTGACAAGCAGCAGCAGTTATTCCAATTGCGATCCATCCATACCGACCTGAAGAAGCAGGAGCAGAGGACCAAGATGAGACAGGCTCAACGCAAGGCCAAACAAGAGGCGCAGAAGAGCATGCCTCGCCGACTAGGCAGACTCAAGTTTCAGGCACCTGATCTAGATGTTCAGCTTAGCAATGAGCTTGCCGGCTCTCTCCGCAGTCTAAAGCCAGAGGGCAGCATCCTAAAAGATCGATTTAAGAGCTTACAGAAGAGAAACCTTATTGAGCCCAGAGAAAGAGCCAAGTTTAAGAGGAAGTACAAGCTGAAGTACACAGAGAAGAGAGCCTTCAGGGAGATAAAGTGATCGCACAGAGTTGTTTCTCAGTCCTTTATTATGGTGTCCTATTCATATTGCAATAAGAAA

Function

symbol description
gltscr2 nucleolar protein 53

GO:

id name namespace
GO:0003674 molecular_function molecular_function

KEGG:

id description
K14840 NOP53, GLTSCR2; nucleolar protein 53

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000092_03433283_03442900.mRNA True 1515 mRNA 0.48 11 3433283 3442960

Neighbor

gene id symbol gene type direction distance location
CI01000092_03329908_03348045 NA coding upstream 84964 3329908 ~ 3348319 (+)
CI01000092_03080030_03082866 PCP4 coding upstream 349659 3079562 ~ 3083624 (+)
CI01000092_03007267_03029327 NA coding upstream 403956 3007267 ~ 3029327 (+)
CI01000092_02977237_02979350 SH3BGR coding upstream 453905 2977237 ~ 2979378 (+)
CI01000092_02958119_02966042 WRB coding upstream 466820 2958024 ~ 2966463 (+)
CI01000092_03478431_03479274 GJD1A coding downstream 35471 3478431 ~ 3479793 (+)
CI01000092_03532136_03542761 SIRT2 coding downstream 89176 3532136 ~ 3542883 (+)
CI01000092_03551674_03573437 NA coding downstream 108714 3551674 ~ 3573492 (+)
CI01000092_03693715_03694890 NA coding downstream 247590 3690550 ~ 3695228 (+)
CI01000092_03725440_03728304 NA coding downstream 280083 3723043 ~ 3728325 (+)
G305499 NA non-coding upstream 32795 3399821 ~ 3400488 (+)
G305493 NA non-coding upstream 43045 3384815 ~ 3390238 (+)
G305488 NA non-coding upstream 54377 3376206 ~ 3378906 (+)
G305468 NA non-coding upstream 75703 3357325 ~ 3357580 (+)
G305470 NA non-coding upstream 76186 3356844 ~ 3357097 (+)
G305529 NA non-coding downstream 1866 3444826 ~ 3445117 (+)
G305535 NA non-coding downstream 64322 3507282 ~ 3575953 (+)
G305558 NA non-coding downstream 143912 3586872 ~ 3587109 (+)
G305561 NA non-coding downstream 154752 3597712 ~ 3598766 (+)
G305562 NA non-coding downstream 155929 3598889 ~ 3599275 (+)
G304938 NA other upstream 1115049 2317792 ~ 2318234 (+)
G303768 NA other upstream 2116760 1315443 ~ 1316523 (+)
G305584 NA other downstream 224348 3667308 ~ 3667965 (+)
G305596 NA other downstream 283387 3726347 ~ 3863135 (+)

Expression


Co-expression Network