XLOC_010908


Basic Information

Item Value
gene id XLOC_010908
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 39000013 ~ 39024997 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00021343
AAGCCGTGAATTGTCTGTCCAGGGTGGGAAAAGGCCTGAATCTTCTCACTCCAGACACCGACCCTAGAGTTCCTCTTCATGGTCCGCCTTGAGCAAGCCCAGCTCTGTTCACAGCCCCGCGCCTGATTAATTGTGCAGTTTTGGATTTGTGAGAGTCAGCCTGTTTTTTTCCAGATGAGAGCCACTCGGAGCAAAAACAAAGGTGACCTTGCTGTGCCACGTCGGAGCGTAATGGGTTGCTGTGCTTCATTCGTGAGGTCATATCAGCAGCACCTGCGAGGACTGTGTTGCTTGCGGAGTGTGGAATGGAGGGGAGGCCTGTGCCATTCTCCTGGCTGGCCGAGATGGCGTAATGGGAACTGCCAGCTGTGATGGTAATTACAGCACCACTAAAGAAGACGGGGGCTGTTTTTCTTCAGGGGGCTTACAGCTCAACTGATTTTTCATTTACATGTTTTAAGTAAGATGAAGGAGCTCCCCAAATGGGTTTGAGCCATGCATTAGTGAGAGTGGATACATGCCATTTTTCAAGTGTTGTTCTTTGTCACCGGCGAATTGTTTTAACGCGCCTCCATGCTTGGAACTGTTAAAGGAATGAGGTCTAGAGGAATGCTCACGAAACGGATATAAATGCTCGCTACCTCGGACCATACGTTTCACAAGGGATGGAAATATGGTTTTGATTAGTTGATAAAAAAAGCTTTGTTTATGGTGCTTAGTAAGGCAAGTATCACTTTCATTTTTAGTGATACGACCATAATTCTTGCATCAGTTGTGCGATAGTCATGGGAATGATTCTCTCAATTGCAGTTTATTGAAGAGAGGTGTGCGATTACCTTTCCAAGTGATTACACTTATTTTTATCTTGGCAAACAATGAAAAGGCAAAGAGCATGTAGACTTAAAGGAAATACCAAAGTTATATCTAATGTCTTTTCTTTTCAGAATGTTATAGGAACTTGGCGTGGGCTGAAAATTATTTAGCATGGAGTTTTTCTGTGTATATTTTCAGCAAAATGCACGGAAATGCAACTAATTTTAAAGATGTGATCACACAGGGA
>TCONS_00022216
CTTTGTTCTCCAGATCACCTGCCTCTAAATAGGTAGCTTGTCCTCACACTTGAAGTGCTTAGATGTCAGAGGCGAAACCCCCACGGCCTGAGGGTGAAGAAGGGCTTTGGGGTGATATCTACTCTGATGAACGTGGTGTATCTTCTCGCTCCAGTCTCCTGCTGATCAGTAGGAGTGGTGCGGAAGCCTCAGGACATGCAGCATGAAACATTATTCATCATCCAACAACAGTAAACTTCCTCCTGGCCTGCAGATGCCAAGCTGTTCTCCTAATGAGATGCATACCAGCGCTGAAGCCTGTGAGACAGATTGGGCCTCCTGCTAGTGTGGTCCACCGCGGTCACAGACCCTACACTGCCCTGCAGGCAATACGGCCCGCCTCTTCCCATCATGCTCCACTGCTGCCTTACCTTGTGCTCCACCCTCCTCTGCATGATGGACATTTTCACAGCAGGAAAGCACAAGCCGTGAATTGTCTGTCCAGGGTGGGAAAAGGCCTGAATCTTCTCACTCCAGACACCGACCCTAGGTCAGATCCGAACAGTTCCTCTCCTTTCTAAATGATGTGGAGGAGTCAGGATTTTGTGTGTGAGAGATAGTTCCTCTTCATGGTCCGCCTTGAGCAAGCCCAGCTCTGTTCACAGCCCCGCGCCTGATTAATTGTGCAGTTTTGGATTTGTGAGAGTCAGCCTGTTTTTTTCCAGATGAGAGCCACTCGGAGCAAAAACAAAGGTGACCTTGCTGTGCCACGTCGGAGCGTAATGGGTTGCTGTGCTTCATTCGTGAGGTCATATCAGCAGCACCTGCGAGGACTGTGTTGCTTGCGGAGTGTGGAATGGAGGGGAGGCCTGTGCCATTCTCCTGGCTGGCCGAGATGGCGTAATGGGAACTGCCAGCTGTGATGGTAATTACAGCACCACTAAAGAAGACGGGGGCTGTTTTTCTTCAGGGGGCTTACAGCTCAACTGATTTTTCATTTACATGTTTTAAGTAAGATGAAGGAGCTCCCCAAATGGGTTTGAGCCATGCATTAGTGAGAGTGGATACATGCCATTTTTCAAGTGTTGTTCTTTGTCACCGGCGAATTGTTTTAACGCGCCTCCATGCTTGGAACTGTTAAAGGAATGAGGTCTAGAGGAATGCTCACGAAACGGATATAAATGCTCGCTACCTCGGACCATACGTTTCACAAGGGATGGAAATATGGTTTTGATTAGTTGATAAAAAAAGCTTTGTTTATGGTGCTTAGTAAGGCAAGTATCACTTTCATTTTTAGTGATACGACCATAATTCTTGCATCAGTTGTGCGATAGTCATGGGAATGATTCTCTCAATTGCAGTTTATTGAAGAGAGGTGTGCGATTACCTTTCCAAGTGATTACACTTATTTTTATCTTGGCAAACAATGAAAAGGCAAAGAGCATGTAGACTTAAAGGAAATACCAAAGTTATATCTAATGTCTTTTCTTTTCAGAATGTTATAGGAACTTGGCGTGGGCTGAAAATTATTTAGCATGGAGTTTTTCTGTGTATATTTTCAGCAAAATGCACGGAAATGCAACTAATTTTAAAGATGTGATCACACAGGGA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00021343 False 1060 lncRNA 0.44 4 39000013 39005379
TCONS_00022216 True 1590 lncRNA 0.46 6 39000013 39024997

Neighbor

gene id symbol gene type direction distance location
XLOC_010907 NA coding downstream 49866 38948644 ~ 38950147 (-)
XLOC_010906 BX571839.1 coding downstream 78268 38920128 ~ 38921745 (-)
XLOC_010905 NA coding downstream 195861 38802405 ~ 38804152 (-)
XLOC_010903 eif3ea coding downstream 368044 38556836 ~ 38631969 (-)
XLOC_010904 CU855886.1 coding downstream 437369 38562527 ~ 38562644 (-)
XLOC_010909 BX296552.2 coding upstream 4886 39029883 ~ 39109931 (-)
XLOC_010910 gdf6a coding upstream 100592 39125589 ~ 39131666 (-)
XLOC_010911 si:dkey-99n20.6 coding upstream 147845 39172842 ~ 39178979 (-)
XLOC_010912 ebag9 coding upstream 160106 39185103 ~ 39195318 (-)
XLOC_010913 tmem42a coding upstream 212771 39237768 ~ 39241801 (-)
XLOC_010626 CR392024.2 misc downstream 18104838 20895112 ~ 20895175 (-)
XLOC_010901 NA non-coding downstream 605455 38385808 ~ 38394558 (-)
XLOC_010899 NA non-coding downstream 658209 38198913 ~ 38341804 (-)
XLOC_010917 NA non-coding upstream 587897 39612894 ~ 39625362 (-)
XLOC_010919 CR626944.1 non-coding upstream 860137 39885134 ~ 39885251 (-)
XLOC_010920 CT025588.1 non-coding upstream 1011714 40036711 ~ 40037796 (-)
XLOC_010923 NA non-coding upstream 1311484 40336481 ~ 40340518 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000016_01277792_01304615 NA coding CI01000016 null 1276928 ~ 1304762 (+)