Item | Value |
---|---|
gene id | XLOC_010915 |
gene name | stt3b |
gene type | coding |
species | zebrafish (Danio rerio) |
category of species | model fish |
Item | Value |
---|---|
chromosome id | NC_007127.7 |
NCBI id | CM002900.2 |
chromosome length | 55266484 |
location | 39385483 ~ 39477746 (-) |
genome version | GRCz11_2017_zebrafish_Genome |
symbol | description |
---|---|
stt3b | Predicted to enable dolichyl-diphosphooligosaccharide-protein glycotransferase activity and metal ion binding activity. Predicted to act upstream of or within protein glycosylation. Predicted to be located in membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation Ix. Orthologous to human STT3B (STT3 oligosaccharyltransferase complex catalytic subunit B). |
id | name | namespace |
---|---|---|
GO:0006486 | protein glycosylation | biological_process |
GO:0016020 | membrane | cellular_component |
GO:0016021 | integral component of membrane | cellular_component |
GO:0016740 | transferase activity | molecular_function |
GO:0004576 | oligosaccharyl transferase activity | molecular_function |
id | description |
---|---|
ZDB-GENE-030131-2638 | Predicted to enable dolichyl-diphosphooligosaccharide-protein glycotransferase activity and metal ion binding activity. Predicted to act upstream of or within protein glycosylation. Predicted to be located in membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation Ix. Orthologous to human STT3B (STT3 oligosaccharyltransferase complex catalytic subunit B). |
ensembl_id | ENSDARG00000001890 |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
TCONS_00021353 | False | 4224 | mRNA | 0.47 | 16 | 39385483 | 39477746 |
TCONS_00021354 | True | 6022 | mRNA | 0.41 | 15 | 39386346 | 39477509 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
XLOC_010914 | gpd1l | coding | downstream | 118256 | 39248644 ~ 39267227 (-) |
XLOC_010913 | tmem42a | coding | downstream | 143682 | 39237768 ~ 39241801 (-) |
XLOC_010912 | ebag9 | coding | downstream | 190165 | 39185103 ~ 39195318 (-) |
XLOC_010911 | si:dkey-99n20.6 | coding | downstream | 206504 | 39172842 ~ 39178979 (-) |
XLOC_010910 | gdf6a | coding | downstream | 253817 | 39125589 ~ 39131666 (-) |
XLOC_010916 | tgfbr2b | coding | upstream | 27417 | 39505163 ~ 39605661 (-) |
XLOC_010917 | NA | coding | upstream | 135148 | 39612894 ~ 39625362 (-) |
XLOC_010918 | rbms3 | coding | upstream | 165522 | 39643268 ~ 39900665 (-) |
XLOC_010919 | CR626944.1 | coding | upstream | 407388 | 39885134 ~ 39885251 (-) |
XLOC_010920 | CT025588.1 | coding | upstream | 558965 | 40036711 ~ 40037796 (-) |
XLOC_010626 | CR392024.2 | misc | downstream | 18490308 | 20895112 ~ 20895175 (-) |
XLOC_010909 | BX296552.2 | non-coding | downstream | 275552 | 39029883 ~ 39109931 (-) |
XLOC_010908 | NA | non-coding | downstream | 360486 | 39000013 ~ 39024997 (-) |
XLOC_010907 | NA | non-coding | downstream | 435336 | 38948644 ~ 38950147 (-) |
XLOC_010905 | NA | non-coding | downstream | 581331 | 38802405 ~ 38804152 (-) |
XLOC_010904 | CU855886.1 | non-coding | downstream | 822839 | 38562527 ~ 38562644 (-) |
XLOC_010923 | NA | non-coding | upstream | 858735 | 40336481 ~ 40340518 (-) |
XLOC_010927 | BX324007.2 | non-coding | upstream | 1043992 | 40521738 ~ 40584050 (-) |
species | gene id | symbol | gene type | chromosome | NCBI id | location |
---|---|---|---|---|---|---|
grasscarp (Ctenopharyngodon idella) | CI01000016_01122656_01129008 | STT3B | coding | CI01000016 | null | 1122656 ~ 1129008 (+) |