Fish Transcriptome and Expression Database

Home /
Search /
- Gene
- RNA
- Bioproject
Expression /
Analysis /
- Coding ability prediction
- Expression count
- Visual Omics
Tools /
- Neighbor
- BLAST
Statistics /
Download /
Help

model fish

XLOC_010919 (CR626944.1)

Basic Information

Item	Value
gene id	XLOC_010919
gene name	CR626944.1
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007127.7
NCBI id	CM002900.2
chromosome length	55266484
location	39885134 ~ 39885251 (-)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00021363
ataatTAATCAAAGCCTACTATAGcttctcacatggttgcccacagaagctaagcagggctgtgcctggtcagtacctggattggagaccacatgggaatgctaggttgttgctggaa

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000083807

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00021363	True	118	rRNA	0.47	1	39885134	39885251

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_010917	NA	coding	downstream	259772	39612894 ~ 39625362 (-)
XLOC_010916	tgfbr2b	coding	downstream	279473	39505163 ~ 39605661 (-)
XLOC_010915	stt3b	coding	downstream	407388	39385483 ~ 39477746 (-)
XLOC_010914	gpd1l	coding	downstream	617907	39248644 ~ 39267227 (-)
XLOC_010913	tmem42a	coding	downstream	643333	39237768 ~ 39241801 (-)
XLOC_010920	CT025588.1	coding	upstream	151460	40036711 ~ 40037796 (-)
XLOC_010921	si:dkey-29b11.3	coding	upstream	155562	40040813 ~ 40043322 (-)
XLOC_010922	BX470182.3	coding	upstream	252782	40138033 ~ 40155424 (-)
XLOC_010923	NA	coding	upstream	451230	40336481 ~ 40340518 (-)
XLOC_010924	si:dkey-242e21.3	coding	upstream	468565	40353816 ~ 40373836 (-)
XLOC_010626	CR392024.2	misc	downstream	18989959	20895112 ~ 20895175 (-)
XLOC_010909	BX296552.2	non-coding	downstream	775203	39029883 ~ 39109931 (-)
XLOC_010908	NA	non-coding	downstream	860137	39000013 ~ 39024997 (-)
XLOC_010907	NA	non-coding	downstream	934987	38948644 ~ 38950147 (-)
XLOC_010905	NA	non-coding	downstream	1080982	38802405 ~ 38804152 (-)
XLOC_010927	BX324007.2	non-coding	upstream	636487	40521738 ~ 40584050 (-)
XLOC_010929	BX324007.1	non-coding	upstream	796677	40681928 ~ 40682703 (-)
XLOC_010930	NA	non-coding	upstream	1064617	40949868 ~ 40957633 (-)

Expression

Co-expression Network