Gene
RNA
| Item | Value |
|---|---|
| gene id | G303809 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000092 |
| NCBI id | null |
| chromosome length | 5370156 |
| location | 1272700 ~ 1273167 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU345202 | False | 468 | lncRNA | 0.38 | 1 | 1272700 | 1273167 |
| TU345201 | True | 386 | lncRNA | 0.39 | 1 | 1272782 | 1273167 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000092_01163367_01169844 | NA | coding | upstream | 101931 | 1163308 ~ 1170769 (+) |
| CI01000092_01050305_01051867 | NA | coding | upstream | 220240 | 1050305 ~ 1052460 (+) |
| CI01000092_01034513_01049419 | MAML2 | coding | upstream | 223281 | 1034513 ~ 1049419 (+) |
| CI01000092_00964013_00967452 | NA | coding | upstream | 305225 | 963887 ~ 980369 (+) |
| CI01000092_00887219_00908525 | NA | coding | upstream | 364175 | 887219 ~ 908525 (+) |
| CI01000092_01625114_01626286 | NA | coding | downstream | 351440 | 1624607 ~ 1626717 (+) |
| CI01000092_01871020_01880095 | NA | coding | downstream | 597853 | 1871020 ~ 1882078 (+) |
| CI01000092_01889654_01894899 | NA | coding | downstream | 616487 | 1889654 ~ 1895088 (+) |
| CI01000092_01912280_01944807 | ABCG1 | coding | downstream | 639113 | 1912280 ~ 1945217 (+) |
| CI01000092_01962495_01963651 | NA | coding | downstream | 689328 | 1962495 ~ 1963887 (+) |
| G303772 | NA | non-coding | upstream | 59950 | 1212058 ~ 1212750 (+) |
| G303702 | NA | non-coding | upstream | 163088 | 1109207 ~ 1109612 (+) |
| G303700 | NA | non-coding | upstream | 163505 | 1108972 ~ 1109195 (+) |
| G303693 | NA | non-coding | upstream | 168333 | 1104087 ~ 1104367 (+) |
| G303682 | NA | non-coding | upstream | 187265 | 1084338 ~ 1085435 (+) |
| G303813 | NA | non-coding | downstream | 3801 | 1276968 ~ 1277286 (+) |
| G303821 | NA | non-coding | downstream | 16267 | 1289434 ~ 1289771 (+) |
| G303824 | NA | non-coding | downstream | 21046 | 1294213 ~ 1294543 (+) |
| G303833 | NA | non-coding | downstream | 45842 | 1319009 ~ 1322900 (+) |
| G303798 | NA | non-coding | downstream | 83030 | 1356197 ~ 1384944 (+) |
| G303768 | NA | other | downstream | 42276 | 1315443 ~ 1316523 (+) |
| G304938 | NA | other | downstream | 1044625 | 2317792 ~ 2318234 (+) |
| G305584 | NA | other | downstream | 2394141 | 3667308 ~ 3667965 (+) |
| G305596 | NA | other | downstream | 2453180 | 3726347 ~ 3863135 (+) |
