XLOC_010925 (plekhf2)


Basic Information

Item Value
gene id XLOC_010925
gene name plekhf2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 40425873 ~ 40459104 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00021369
ATTAGTCCCTGCCCCTTCTCCCACACCACCCCGACCCGGAGTCACGCTAGTGACGCTTACATTCCCTGCTCCTGCCCTCAGCCATATTGAAACTGCAGTTTTCGACTTTGGCTGCCCGGGAAAGTGGCAGATCAGCTTCCAACTCAAGCTTTTTTGAATctggaatttaaatattttgaccGTTGGAAAACTTCAGAGAGATTGCGGCTTCCCGTCTCCAGCCGTTGATCGGTTGTGTTGAGGTGTCTGAAAGATGGTGGACCGCTTGGCGAACAGTGAGGCCAACTCTAAACGCATCGGGGTGGTGGAGGCATGCTTCGGCACAGCAGGCCAACCGCTGGCCATCCCAGGTCGAGTTCTGATCGGAGAGGGCGTTCTCACAAAGCTGTGCCGCAAAAGACCCAAAGCTCGGCAGTTCTTCCTCTTCAACGACATCCTGGTGTACGGCAACATCGTCATCCAGAAGAAGAAGTACAATAAGCAGCACATCATCCCTTTGGAGAGCGTCACCATAGACACGGTCGAGGACGAGGGCGAATTGCGCAACGGCTGGCTCATTAAAACGCCCACCAAATCCTTTGCTGTTTACGCCGCAACCGCAACGGAGAAGTCCGAGTGGATGAGCCACATCAACAAATGCGTTTCGGACTTGCTTGAAAAAAGCGGGAAATCTCCTACCGGCGAGCACGCCGCAGTCTGGGTGCCCGATTCAGAGGCAACCGTGTGCATGCGCTGCCAGAAGATGAAGTTCACCCCTGTCAACCGGCGCCATCACTGCCGGAAGTGTGGCTTCGTCGTATGTGGCCCGTGCTCAGAGAAAAAGTTCCTTCTCCCCAGCCAGTCCTCCAAACCAGTGCGCGTGTGCGAGTTCTGTTACAAGCAGCTCTCGACGGGTGCTACTCTCCCGCCCCGATCAGACTCCTACAGCCGGCAGGGCTCCGACTTCGGCAGCAACAACATCTCAGATGACGACGATGACGACGACAGCAGTGACTGAGAGTCTCTTTTAGGAAACACTGACAATATACAGATCCCAATATTTTAGTCTCTCATTCAAGGTTTGCAAAGGTTCCTCTGGCAATAACAGTTTCCCTAAATAATTAAAAGCCCTGTGCAAATGAACAAAAGGTTTGATGGGAATTGATCCTCATGAACACTACTTGTCGGCTCGCTACACTTCCACATTAAAGTCCCTCTCAGTCCAATTTAA
>TCONS_00021370
TCTGAAAGATGGTGGACCGCTTGGCGAACAGTGAGGCCAACTCTAAACGCATCGGGGTGGTGGAGGCATGCTTCGGCACAGCAGGCCAACCGCTGGCCATCCCAGGTCGAGTTCTGATCGGAGAGGGCGTTCTCACAAAGCTGTGCCGCAAAAGACCCAAAGCTCGGCAGTTCTTCCTCTTCAACGACATCCTGGTGTACGGCAACATCGTCATCCAGAAGAAGAAGTACAATAAGCAGCACATCATCCCTTTGGAGAGCGTCACCATAGACACGGTCGAGGACGAGGGCGAATTGCGCAACGGCTGGCTCATTAAAACGCCCACCAAATCCTTTGCTGTTTACGCCGCAACCGCAACGGAGAAGTCCGAGTGGATGAGCCACATCAACAAATGCGTTTCGGACTTGCTTGAAAAAAGCGGGAAATCTCCTACCGGCGAGCACGCCGCAGTCTGGGTGCCCGATTCAGAGGCAACCGTGTGCATGCGCTGCCAGAAGATGAAGTTCACCCCTGTCAACCGGCGCCATCACTGCCGGAAGTGTGGCTTCGTCGTATGTGGCCCGTGCTCAGAGAAAAAGTTCCTTCTCCCCAGCCAGTCCTCCAAACCAGTGCGCGTGTGCGAGTTCTGTTACAAGCAGCTCTCGACGGGTGCTACTCTCCCGCCCCGATCAGACTCCTACAGCCGGCAGGGCTCCGACTTCGGCAGCAACAACATCTCAGATGACGACGATGACGACGACAGCAGTGACTGA

Function

symbol description
plekhf2 Predicted to enable phosphatidylinositol binding activity. Predicted to act upstream of or within protein transport. Predicted to be located in early endosome membrane and endoplasmic reticulum. Orthologous to human PLEKHF2 (pleckstrin homology and FYVE domain containing 2).

GO:

id name namespace
GO:0015031 protein transport biological_process
GO:0005768 endosome cellular_component
GO:0005783 endoplasmic reticulum cellular_component
GO:0031901 early endosome membrane cellular_component
GO:0016020 membrane cellular_component
GO:0046872 metal ion binding molecular_function
GO:0035091 phosphatidylinositol binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-884 Predicted to enable phosphatidylinositol binding activity. Predicted to act upstream of or within protein transport. Predicted to be located in early endosome membrane and endoplasmic reticulum. Orthologous to human PLEKHF2 (pleckstrin homology and FYVE domain containing 2).

Ensembl:

ensembl_id ENSDARG00000021141

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00021369 False 1210 mRNA 0.52 2 40425873 40459104
TCONS_00021370 True 752 mRNA 0.57 1 40426086 40426837

Neighbor

gene id symbol gene type direction distance location
XLOC_010924 si:dkey-242e21.3 coding downstream 52037 40353816 ~ 40373836 (-)
XLOC_010923 NA coding downstream 85355 40336481 ~ 40340518 (-)
XLOC_010922 BX470182.3 coding downstream 270449 40138033 ~ 40155424 (-)
XLOC_010921 si:dkey-29b11.3 coding downstream 382551 40040813 ~ 40043322 (-)
XLOC_010920 CT025588.1 coding downstream 388077 40036711 ~ 40037796 (-)
XLOC_010926 ndufaf6 coding upstream 28628 40487732 ~ 40508624 (-)
XLOC_010927 BX324007.2 coding upstream 62634 40521738 ~ 40584050 (-)
XLOC_010928 si:dkey-22o22.2 coding upstream 135024 40594128 ~ 40841363 (-)
XLOC_010929 BX324007.1 coding upstream 222824 40681928 ~ 40682703 (-)
XLOC_010930 NA coding upstream 490764 40949868 ~ 40957633 (-)
XLOC_010626 CR392024.2 misc downstream 19530698 20895112 ~ 20895175 (-)
XLOC_010919 CR626944.1 non-coding downstream 540622 39885134 ~ 39885251 (-)
XLOC_010917 NA non-coding downstream 800511 39612894 ~ 39625362 (-)
XLOC_010909 BX296552.2 non-coding downstream 1315942 39029883 ~ 39109931 (-)
XLOC_010933 NA non-coding upstream 583890 41042994 ~ 41049894 (-)
XLOC_010934 NA non-coding upstream 644387 41103491 ~ 41108712 (-)

Expression


Co-expression Network