XLOC_010927 (BX324007.2)


Basic Information

Item Value
gene id XLOC_010927
gene name BX324007.2
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 40521738 ~ 40584050 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00021372
GCTGAAGAAGAATGTTCCAGTAGTGTTTGTTACTTTTGGTGTCTGGAAAGAGAGCATGCGACTACTAAAccttcaacaacaaaaaagttctGTGTCAAGAAATCACTGTGAAAAGGAGTTTGTATGAGAGGTCGCTGACGAGGGCTGTGAACGGCGTACACGGACATGCTGGGGTGCTCGATCAGTAGGTTCTCCAGAGGACTTGTCTCCAGCAGGACCGGAGCTCTGCCTCCAGCCATGAAACACGGTGGAGGAGTGATGAACCAGCTCTCCTCCAGCCCACACGTGGCCTCCAGATGCAAGAAGTTGCCGTCCTCTGCATCAGTGTCTGCCACCGAATCCAGAGAGGAGCAGGAGGAGCAGCGCACGGGAGGGTCAAGCGGAGCAACGTCATCATGGCAAACCTCCAGATCATCTCCACATGCACCAGAGCAGGCCTTTGCTACAGGAACAGACGACAGAGAGGATGTTATAGAAAGTTGTGGCATATATTCACTGAACATCACACTACAGCCCAGCAAAACAACACCTGACAGACTGCACTATGGACAAAAGCAATAAAGGCATTTTCAAAAC
>TCONS_00022219
CAGGAACAGACGACAGAGAGGATGTTATAGAAAGTTGTGGCATATATTGTGTCAAAAGacataaagacagacagatactCCTGAGAACAGACCAGCCAAAACAAAGCAGTCTAAAGTGTCTCTGCTGTCACAGATACCGCTTGTCCTCCTCACGCGAAGCTGATGCCTGTGAAAACTGATCTTTGTACAGATACACCCAGCCTCGTTCAGGACTATGACTCACGAGGGTACTCTTATGTGTTGTTTTGCTTGCTACAACAAAGAGAGACAGCTGTGAAGTGAAGGACTACAAGCTGTTCTTCACCCCACTGCACCACTGAAACAAGAAAACCAATTCATACTCCTTCCACCTGCTCATATAGTCGTGGTGTAGCAGCCTTTGTTTTGAGCATTTAGGGGGTTGGGAGCTATTATGGGGTCACATACATATAATAAGTGCCCTTCAGAACCCCAAAAAGAGGATTATAGACTGACAAGCAGAGATAAGCAGCGGCTTTGTGTCAGCAGC
>TCONS_00022220
CGGAGCAACGTCATCATGGCAAACCTCCAGATCATCTCCACATGCACCAGAGCAGGCCTTTGCTACAGGAACAGACGACAGAGAGGATGTTATAGAAAGTTGTGGCATATATTGGCCACACCTTGTTTATCAGTAGTCTTGCAGAGTCCTGCCAGATGACATCGAACACTTTCTCAACTCAGGGATCTTAACCTTCTTACACCACTGTTCAGCGTCCCTGAGAAGCCAGTTAAACTCTAATACGCTCGCTGTGATGGGAAAGTACTCGCCGATATTTCCATCAAGCTACACGGGTGTGAAAAAAGAGGAATGTTTTCAACCTCCAGTCTCATCTTGTCCTCCTCAGCCTTCAGGCAAAAGATTTATGTTTATAATCGCTCCATGTTCAAGGCCCACCCGTGTAATGTGCATAAATGGTAACTTAATCTGTCCTATTTTTACCTCAGACCCCACCGTAGACACTTTTGTCTGACAGGCTAAAAGCGTTGTTGCCCATAAAcatctctccctccctccctccgcTAATAAAGGTGAACTGGGGCAGTCAGATTGCCTTGCACCTgaaatattcacacacatacacaatatgAGAAGGCCTGTATTTGGGCAGGCATCATGTTAATGAGGGCATTGCGTCTGTGCCAGGGGTTACAGAATCTGTAATATGGCTCCGGCAGACTGGGCCATCTGTATCAACTGAGGTACACTAGGGTCATCTCATACATAAGAGGATGTATGCGTGCCCAGTTTACACAGAGCATGAGGAGGAAATTATACTGAATTCTGATGAATGCGATTGCATTTACATCTATCATGCAAACAGATAATTAGACGTTGCATATTGAAAATGTAGAAGTAAGATTTTAACGTAGATATTATGAAAAAGACCTGAAATCTAAAAATTTGTTTGCTAAAACAAGC

Function

GO:

id name namespace
GO:0006892 post-Golgi vesicle-mediated transport biological_process
GO:0043412 macromolecule modification biological_process
GO:0005794 Golgi apparatus cellular_component

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000100586

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00021372 False 576 lncRNA 0.51 3 40521738 40584050
TCONS_00022219 False 508 lncRNA 0.45 2 40562612 40568139
TCONS_00022220 True 921 lncRNA 0.44 2 40565427 40568204

Neighbor

gene id symbol gene type direction distance location
XLOC_010926 ndufaf6 coding downstream 13114 40487732 ~ 40508624 (-)
XLOC_010925 plekhf2 coding downstream 62634 40425873 ~ 40459104 (-)
XLOC_010924 si:dkey-242e21.3 coding downstream 147902 40353816 ~ 40373836 (-)
XLOC_010923 NA coding downstream 181220 40336481 ~ 40340518 (-)
XLOC_010922 BX470182.3 coding downstream 366314 40138033 ~ 40155424 (-)
XLOC_010928 si:dkey-22o22.2 coding upstream 10078 40594128 ~ 40841363 (-)
XLOC_010929 BX324007.1 coding upstream 97878 40681928 ~ 40682703 (-)
XLOC_010930 NA coding upstream 365818 40949868 ~ 40957633 (-)
XLOC_010931 KCNV1 coding upstream 407861 40991911 ~ 41004731 (-)
XLOC_010932 si:dkey-201i6.8 coding upstream 448911 41032961 ~ 41059919 (-)
XLOC_010626 CR392024.2 misc downstream 19626563 20895112 ~ 20895175 (-)
XLOC_010920 CT025588.1 non-coding downstream 483942 40036711 ~ 40037796 (-)
XLOC_010919 CR626944.1 non-coding downstream 636487 39885134 ~ 39885251 (-)
XLOC_010917 NA non-coding downstream 896376 39612894 ~ 39625362 (-)
XLOC_010909 BX296552.2 non-coding downstream 1411807 39029883 ~ 39109931 (-)
XLOC_010933 NA non-coding upstream 458944 41042994 ~ 41049894 (-)
XLOC_010934 NA non-coding upstream 519441 41103491 ~ 41108712 (-)
XLOC_010940 NA non-coding upstream 938988 41523038 ~ 41529013 (-)

Expression


Co-expression Network