G304938



Basic Information


Item Value
gene id G304938
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information


Item Value
chromosome id CI01000092
NCBI id null
chromosome length 5370156
location 2317792 ~ 2318234 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence


>TU346472
AAAACATCAATGGCTGTAATCTTAATTTATCGACCTCCAAAATTTCATTCAGACTTTTTCTCTGAGATTAGTGAGTTACTTACTCTTGTCTGTGCTAGTTATTCATCTGTAATTTTTCTTGGTGACTTTAATATACATGAACACACTGTACAATGCAACGAATTGATGTCTGTTCTGGATTGTTTCAGTCTAACTCAACATGTAACTTTTGCTACTTACTCCAGGAGTCATATATTGGATCTTATATGTACATCTGGCTTATATAATATTCTTGTTAGTGGAACTGATTTTGCTTTTTCAGATCACAAACTCCTAAGCTTCAGTTTTAGTTTTCCTACATCTATATCGCCTGTGGAAAAAAAAAAAAAAAAAATGCTCACTTATCGTAAAATCTGTTCTGTGGATCCATCTGCTTTCTCTGATTCAATAAGGGCTTCTACCTT

Function


GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA


RNA id representative length rna type GC content exon number start site end site
TU346472 True 443 TUCP 0.33 1 2317792 2318234

Neighbor


gene id symbol gene type direction distance location
CI01000092_02279826_02285934 NA coding upstream 31713 2276512 ~ 2286079 (+)
CI01000092_02186791_02187942 NA coding upstream 129850 2186791 ~ 2187942 (+)
CI01000092_01989763_02003920 PGM2L1 coding upstream 313662 1989763 ~ 2004130 (+)
CI01000092_01985290_01986640 NA coding upstream 331105 1985290 ~ 1986687 (+)
CI01000092_01962495_01963651 NA coding upstream 353905 1962495 ~ 1963887 (+)
CI01000092_02358901_02363225 NA coding downstream 39669 2357903 ~ 2364462 (+)
CI01000092_02395791_02407508 NA coding downstream 77367 2395601 ~ 2407642 (+)
CI01000092_02411552_02412283 NA coding downstream 93318 2411552 ~ 2413511 (+)
CI01000092_02418597_02419541 NA coding downstream 100174 2418408 ~ 2419996 (+)
CI01000092_02470059_02471839 OR112-1 coding downstream 151118 2469352 ~ 2471951 (+)
G304934 NA non-coding upstream 6151 2311399 ~ 2311641 (+)
G304930 NA non-coding upstream 17273 2300294 ~ 2300519 (+)
G304907 NA non-coding upstream 59105 2258273 ~ 2258687 (+)
G304906 NA non-coding upstream 60142 2257366 ~ 2257650 (+)
G304901 NA non-coding upstream 73515 2244072 ~ 2244277 (+)
G304955 NA non-coding downstream 32486 2350720 ~ 2350923 (+)
G304963 NA non-coding downstream 63024 2381258 ~ 2381543 (+)
G304966 NA non-coding downstream 75896 2394130 ~ 2394368 (+)
G304967 NA non-coding downstream 77676 2395910 ~ 2396126 (+)
G304968 NA non-coding downstream 83961 2402195 ~ 2402505 (+)
G303768 NA other upstream 1001269 1315443 ~ 1316523 (+)
G305584 NA other downstream 1349074 3667308 ~ 3667965 (+)
G305596 NA other downstream 1408113 3726347 ~ 3863135 (+)

Expression



Co-expression Network