G305084


Basic Information

Item Value
gene id G305084
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000092
NCBI id null
chromosome length 5370156
location 2509042 ~ 2524185 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU346641
TCTTCTTACATTTGATCATCAATATCATTTTCTTTATACTTTCATTCATTCTTGTCAATAATTAAGTTTACTTATTTTAGAATTGTGGTTTATCCAGCACATGGAAATTATAATATATCAGTTCATTGAACAATCCATTTTCATTTAAACTTTTCTTTCTTTCTTTCTTTCTATCTTTCTTTCTTTCTTTCTTTCACAAAACATACAAATTATTGACGTCTCATGCAGTAAGTCAAGGCCTCATTCATATAGAAAGCACATAATCTTTGCAATGTAAAAATGGCAACATTTCCAATCAAGTGTCTTTTGTCTTTTAGTGGCTCTCCAGCTCAGAGAATTACTGGATGAGACTAGAGGAGTCAGACAAGTATGAAATTGTCCATAGAATATTTAAACGAATAGTTTGCCCCAAAATGAAAATTCTGTCATCATTTATTTACTGTGATGTTGTTCTGAACCTGCATGACTTTCTTTCTTCCATGAAACACAACAAGAGAAATTTTAAAGAATGAGCTGTTTTTTTCAGTGCAGAAAAAATTAAAATAGGGACTGGAGCTTTCAAATTTCCAACATGACCATATGGAGCAAAACCATATTAAAAGAATTAGTCACAGTCCATGTGACTTTGTACACTTAAGTCATTTTGCATTGCTAGAGGAACAGACAGATATTTAAGTTATTAAACAATGACATCTGCCCAACATCTACTTGGCCATAGTTCATGAGAGTTCAAGTAGTGATTCTTGATTCAACGTTTATTTTTCTTTCTTTCTTTATTTATTTATTTATTTGAGTCTGATTTTTTCAATGAATTGTGTGATCTGGTTCACACCGAATAATTCATTCACAAACTTTGATTTTTTTTTGCACAAACGAAATTAAAGAAATTATTTATACAATATAGGCACAAGTTGGGGCGAATTTTAATGATTATTTTATGGTGCTAGAAAAAAGCTGCACTTGAAAGCTGCAGTCCCCATTAATTATGATAAAAAAAAACAGTACATTCTTCAAAATTTCTCATTTTCTGTTCCACAGATGATGGTTTTGAAACAGATTTAAGTATACACATAATTTATTCAGAATAGATACTGTAACTGGAATGTTTGTAGCACACAACTATTCATAGGTGCTTTGTTTGAGAAGCTTCAATTATGTAAAAATATCCTATAATAATATACTGTCCCTTTAAAGATATATAGGCATTGTTTACAATTAAATGATTTCATAGAAACCCACTTTTAGAAACCATTGAAGAGAAAAAAATGTCATAAATGGTTGTTGCATTGTCATGTATCATATATATATATATATATATATATATATATATACGATAACTTTTAGATTAGATGAGACATTGGTTCTTTTGAAACATGGAAAAAAGTACCTCAGTTGAGACATGAGACATTATAAAGATTATTCAATTTGGCAGCTTTTTATAATAAAAAATAGTAAATCCAGTTCCTTTTAGAGTAATTAAAACAGAACAAATTCCATACATTAAATAGGGTTTAATACGAAGCCACGACCCTCAAACTCCCCCTCTGTTCTAATCAAAGGAAGAATCTATAAAACAAAGCAACAACAAAGGCATGCTACCACCGACGTTTGATTTAGCTATGATGAGAAGCCATTGCCTCAACCCCAAAAGACCCTCTAATATCCGAGGCACTCAGTGGGCGGCCTATCAACTAAAACCTCACCTTCTAATCGCTTCAACGACAAGGTCACATTTTTCTACACAAGTTTTTATTTTACACCCTCGCAGGATGGAAGAGACGAATGTGAACAAGAACACAACAACTGCACCACTGTGAGTGTGTTAAAGGGTGTCCCATTTTTCCAGGTTATCTAGAAAGGGTCTCTCGTATCGTCACAACACAGGAAACTCTTATCTGCATGTCTATCTGTCATTCAGTTTGGGCGAATCGGCACCCTCCTCATCTTCATCTTTGTCGTCTTTTGCCCCGATCAGTCGTTGCCGAGCAAAGTCCTCGAAGATGATGTCATCGTCACTA
>TU346642
TCTTCTTACATTTGATCATCAATATCATTTTCTTTATACTTTCATTCATTCTTGTCAATAATTAAGTTTACTTATTTTAGAATTGTGGTTTATCCAGCACATGGAAATTATAATATATCAGTTCATTGAACAATCCATTTTCATTTAAACTTTTCTTTCTTTCTTTCTTTCTATCTTTCTTTCTTTCTTTCTTTCACAAAACATACAAATTATTGACGTCTCATGCAGTAAGTCAAGGCCTCATTCATATAGAAAGCACATAATCTTTGCAATGTAAAAATGGCAACATTTCCAATCAAGTGTCTTTTGTCTTTTAGTGGCTCTCCAGCTCAGAGAATTACTGGATGAGACTAGAGGAGTCAGACAAGTATGAAATTGTCCATAGAATATTTAAACGAATAGTTTGCCCCAAAATGAAAATTCTGTCATCATTTATTTACTGTGATGTTGTTCTGAACCTGCATGACTTTCTTTCTTCCATGAAACACAACAAGAGAAATTTTAAAGAATGAGCTGTTTTTTTCAGTGCAGAAAAAATTAAAATAGGGACTGGAGCTTTCAAATTTCCAACATGACCATATGGAGCAAAACCATATTAAAAGAATTAGTCACAGTCCATGTGACTTTGTACACTTAAGTCATTTTGCATTGCTAGAGGAACAGACAGATATTTAAGTTATTAAACAATGACATCTGCCCAACATCTACTTGGCCATAGTTCATGAGAGTTCAAGTAGTGATTCTTGATTCAACGTTTATTTTTCTTTCTTTCTTTATTTATTTATTTATTTGAGTCTGATTTTTTCAATGAATTGTGTGATCTGGTTCACACCGAATAATTCATTCACAAACTTTGATTTTTTTTTGCACAAACGAAATTAAAGAAATTATTTATACAATATAGGCACAAGTTGGGGCGAATTTTAATGATTATTTTATGGTGCTAGAAAAAAGCTGCACTTGAAAGCTGCAGTCCCCATTAATTATGATAAAAAAAAACAGTACATTCTTCAAAATTTCTCATTTTCTGTTCCACAGATGATGGTTTTGAAACAGATTTAAGTATACACATAATTTATTCAGAATAGATACTGTAACTGGAATGTTTGTAGCACACAACTATTCATAGGTGCTTTGTTTGAGAAGCTTCAATTATGTAAAAATATCCTATAATAATATACTGTCCCTTTAAAGATATATAGGCATTGTTTACAATTAAATGATTTCATAGAAACCCACTTTTAGAAACCATTGAAGAGAAAAAAATGTCATAAATGGTTGTTGCATTGTCATGTATCATATATATATATATATATATATATATATATGATAACTTTTAGATTAGATGAGACATTGGTTCTTTTGAAACATGGAAAAAAGTACCTCAGTTGAGACATGAGACATTATAAAGATTATTCAATTTGGCAGCTTTTTATAATAAAAAATAGTAAATCCAGTTCCTTTTAGAGTAATTAAAACAGAACAAATTCCATACATTAAATAGGGTTTAATACGAAGCCACGACCCTCAAACTCCCCCTCTGTTCTAATCAAAGGAAGAATCTATAAAACAAAGCAACAACAAAGGCATGCTACCACCGACGTTTGATTTAGCTATGATGAGAAGCCATTGCCTCAACCCCAAAAGACCCTCTAATATCCGAGGCACTCAGTGGGCGGCCTATCAACTAAAACCTCACCTTCTAATCGCTTCAACGACAAGGTCACATTTTTCTACACAAGTTTTTATTTTACACCCTCGCAGGATGGAAGAGACGAATGTGAACAAGAACACAACAACTGCACCACTGTGAGTGTGTTAAAGGGTGTCCCATTTTTCCAGGTTATCTAGAAAGGGTCTCTCGTATCGTCACAACACAGGAAACTCTTATCTGCATGTCTATCTGTCATTCAGTTTGGGCGAATCGGCACCCTCCTCATCTTCATCTTTGTCGTCTTTTGCCCCGATCAGTCGTTGCCGAGCAAAGTCCTCGAAGATGATGTCATCGTCATTTGTGTCAAATTCAATGAGGTTCGTGTCAATGGGGGCATCATTTTCTGGGGCATCTCTGTAGATCGATTCCTCCAATGGTTTGGGATGCATTAATGTAAAGGGGAGCTCGACAGCTACATCACTTGAGGCAAGATCTCCTAGCAGTCTGAAAAAAAAAAAAACAGCATGATCTTACTGTATTACAAAAATTAACACTCTGGAGTCGGGAAACACATTGATGCGTTTTGCTGGATTTTTTTCAAATAGCAGCAAAATCAACTTAAAATACTCTGTCATTTTTTGTCATAGAGACAGAAGTAATATATCAATTGAAACTATAGAATGTCTTCTTTTATTTGTGTACACTCAGAGTAAAAACAAAATGTTGTGCTTTTTGCAAAATAAAGAAAACTGATGCGTGATCTGTCGTCTCCCTCTAAAGGAAGTCCATTCTGATAGTCCTCAGAAAATGAACTGTAACTTAGTGAATACTAATCACAAAAAATGAGACATATGTCTAAAGAAACGTTGAAATGTCAGGTTTTAAATCATGTAAGTCAAATCGAAAACAAATATTCTCTGTTTATGTAATCTGTATAAAAAGAGAAGGTTGTCAGACGTTTGCGAGTCAGCTCATTATTCGCTAATACGGCCACACCACGGAGCGCGAGGCTATTCAGACGCAAATTCTGAGGCGATACATTCAACAGAGTGAACGCCCGCATCAGCTCGGAAAAACATACCAAGCTTGGTTAGTTTCATGTAGGCTACTTTTCATTTGTTTTGAGATGCGGTGAAGAATAGTTCTAAAAGGATTTACCTGAGTGGAAGAGCTGGTTTCACTTTCATTTCAAGGATCAACTCAAGCCAATGATTGTGAATGGTAAGTTTTTTTTATTCTTTAGTTCTTTTTTCTAATTGCGATATAGTGATATAGTGTCTGTGAATATTAAACCGCAAAAAGACTGTTTAAATATGAATCCTGCAAGTTTTGTGTGTCTTTAATTAATGGGGCAGATCGACTTACATTAGTAAACTGCCATGGCTATTCCCAAACTATATTGCTATACTGGGATGAGTGAAATTGACTGAAATATGTAATAAATACTGAAAAATGTGTTAGCAATTTATTAAACTGCACATTAACATTTAGGCTCTATAATATAAAAAATATAATATATAAAATGCCATAGAGGTAATATGAATGTTTAGACGCTTTGCATCACAGAAATAGATTATATTTTAAAGTATATTAAAATAGAAAACGTCTCAGGTTACGTATGTAACCATGGTTCCCTGAGAACAGGGAACGAGACACTGCGTTTACTGCATATGGGGAACGTCACTCGTGAACCGGTGTCTGAAAGCAATGTATCAAATCTCGCCAATCCTATTGGCCGACGACAGCCTATGATG
>TU346643
TCTTCTTACATTTGATCATCAATATCATTTTCTTTATACTTTCATTCATTCTTGTCAATAATTAAGTTTACTTATTTTAGAATTGTGGTTTATCCAGCACATGGAAATTATAATATATCAGTTCATTGAACAATCCATTTTCATTTAAACTTTTCTTTCTTTCTTTCTTTCTATCTTTCTTTCTTTCTTTCTTTCACAAAACATACAAATTATTGACGTCTCATGCAGTAAGTCAAGGCCTCATTCATATAGAAAGCACATAATCTTTGCAATGTAAAAATGGCAACATTTCCAATCAAGTGTCTTTTGTCTTTTAGTGGCTCTCCAGCTCAGAGAATTACTGGATGAGACTAGAGGAGTCAGACAAGTATGAAATTGTCCATAGAATATTTAAACGAATAGTTTGCCCCAAAATGAAAATTCTGTCATCATTTATTTACTGTGATGTTGTTCTGAACCTGCATGACTTTCTTTCTTCCATGAAACACAACAAGAGAAATTTTAAAGAATGAGCTGTTTTTTTCAGTGCAGAAAAAATTAAAATAGGGACTGGAGCTTTCAAATTTCCAACATGACCATATGGAGCAAAACCATATTAAAAGAATTAGTCACAGTCCATGTGACTTTGTACACTTAAGTCATTTTGCATTGCTAGAGGAACAGACAGATATTTAAGTTATTAAACAATGACATCTGCCCAACATCTACTTGGCCATAGTTCATGAGAGTTCAAGTAGTGATTCTTGATTCAACGTTTATTTTTCTTTCTTTCTTTATTTATTTATTTATTTGAGTCTGATTTTTTCAATGAATTGTGTGATCTGGTTCACACCGAATAATTCATTCACAAACTTTGATTTTTTTTTGCACAAACGAAATTAAAGAAATTATTTATACAATATAGGCACAAGTTGGGGCGAATTTTAATGATTATTTTATGGTGCTAGAAAAAAGCTGCACTTGAAAGCTGCAGTCCCCATTAATTATGATAAAAAAAAACAGTACATTCTTCAAAATTTCTCATTTTCTGTTCCACAGATGATGGTTTTGAAACAGATTTAAGTATACACATAATTTATTCAGAATAGATACTGTAACTGGAATGTTTGTAGCACACAACTATTCATAGGTGCTTTGTTTGAGAAGCTTCAATTATGTAAAAATATCCTATAATAATATACTGTCCCTTTAAAGATATATAGGCATTGTTTACAATTAAATGATTTCATAGAAACCCACTTTTAGAAACCATTGAAGAGAAAAAAATGTCATAAATGGTTGTTGCATTGTCATGTATCATATATATATATATATATATATATATATATGATAACTTTTAGATTAGATGAGACATTGGTTCTTTTGAAACATGGAAAAAAGTACCTCAGTTGAGACATGAGACATTATAAAGATTATTCAATTTGGCAGCTTTTTATAATAAAAAATAGTAAATCCAGTTCCTTTTAGAGTAATTAAAACAGAACAAATTCCATACATTAAATAGGGTTTAATACGAAGCCACGACCCTCAAACTCCCCCTCTGTTCTAATCAAAGGAAGAATCTATAAAACAAAGCAACAACAAAGGCATGCTACCACCGACGTTTGATTTAGCTATGATGAGAAGCCATTGCCTCAACCCCAAAAGACCCTCTAATATCCGAGGCACTCAGTGGGCGGCCTATCAACTAAAACCTCACCTTCTAATCGCTTCAACGACAAGGTCACATTTTTCTACACAAGTTTTTATTTTACACCCTCGCAGGATGGAAGAGACGAATGTGAACAAGAACACAACAACTGCACCACTGTGAGTGTGTTAAAGGGTGTCCCATTTTTCCAGGTTATCTAGAAAGGGTCTCTCGTATCGTCACAACACAGGAAACTCTTATCTGCATGTCTATCTGTCATTCAGTTTGGGCGAATCGGCACCCTCCTCATCTTCATCTTTGTCGTCTTTTGCCCCGATCAGTCGTTGCCGAGCAAAGTCCTCGAAGATGATGTCATCGTCATTTGTGTCAAATTCAATGAGGTTCGTGTCAATGGGGGCATCATTTTCTGGGGCATCTCTGTAGATCGATTCCTCCAATGGTTTGGGATGCATTAATGTAAAGGGGAGCTCGACAGCTACATCACTTGAGGCAAGATCTCCTAGCAGTCCTCCACGGGACACCACCAGCTTCACTTTCACCTTATAGGAAACAATGATGCCCAGAATTTCC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU346641 False 2018 lncRNA 0.33 2 2509042 2511516
TU346642 False 3408 lncRNA 0.34 5 2509042 2517201
TU346643 True 2221 lncRNA 0.34 6 2509042 2524185

Neighbor

gene id symbol gene type direction distance location
CI01000092_02470059_02471839 OR112-1 coding upstream 37091 2469352 ~ 2471951 (+)
CI01000092_02418597_02419541 NA coding upstream 89046 2418408 ~ 2419996 (+)
CI01000092_02411552_02412283 NA coding upstream 96259 2411552 ~ 2413511 (+)
CI01000092_02395791_02407508 NA coding upstream 101531 2395601 ~ 2407642 (+)
CI01000092_02358901_02363225 NA coding upstream 144580 2357903 ~ 2364462 (+)
CI01000092_02661524_02662121 NA coding downstream 137198 2661383 ~ 2662183 (+)
CI01000092_02721458_02724152 NA coding downstream 197208 2721393 ~ 2724152 (+)
CI01000092_02739990_02745224 NA coding downstream 215805 2739990 ~ 2745247 (+)
CI01000092_02818349_02838255 NA coding downstream 293435 2817620 ~ 2838255 (+)
CI01000092_02958119_02966042 WRB coding downstream 433839 2958024 ~ 2966463 (+)
G304987 NA non-coding upstream 46934 2461861 ~ 2462108 (+)
G304984 NA non-coding upstream 60389 2448386 ~ 2448653 (+)
G304980 NA non-coding upstream 67774 2440977 ~ 2441268 (+)
G304973 NA non-coding upstream 99309 2409296 ~ 2409733 (+)
G305071 NA non-coding downstream 92052 2616237 ~ 2617160 (+)
G305137 NA non-coding downstream 178580 2702765 ~ 2702979 (+)
G305171 NA non-coding downstream 193789 2717974 ~ 2718193 (+)
G305172 NA non-coding downstream 194257 2718442 ~ 2718646 (+)
G304938 NA other upstream 190808 2317792 ~ 2318234 (+)
G303768 NA other upstream 1192519 1315443 ~ 1316523 (+)
G305584 NA other downstream 1143123 3667308 ~ 3667965 (+)
G305596 NA other downstream 1202162 3726347 ~ 3863135 (+)

Expression


Co-expression Network