Gene
RNA
| Item | Value |
|---|---|
| gene id | G305171 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000092 |
| NCBI id | null |
| chromosome length | 5370156 |
| location | 2717974 ~ 2718193 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU346761 | True | 220 | lncRNA | 0.39 | 1 | 2717974 | 2718193 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000092_02661524_02662121 | NA | coding | upstream | 55801 | 2661383 ~ 2662183 (+) |
| CI01000092_02470059_02471839 | OR112-1 | coding | upstream | 246023 | 2469352 ~ 2471951 (+) |
| CI01000092_02418597_02419541 | NA | coding | upstream | 297978 | 2418408 ~ 2419996 (+) |
| CI01000092_02411552_02412283 | NA | coding | upstream | 305191 | 2411552 ~ 2413511 (+) |
| CI01000092_02395791_02407508 | NA | coding | upstream | 310463 | 2395601 ~ 2407642 (+) |
| CI01000092_02721458_02724152 | NA | coding | downstream | 3200 | 2721393 ~ 2724152 (+) |
| CI01000092_02739990_02745224 | NA | coding | downstream | 21797 | 2739990 ~ 2745247 (+) |
| CI01000092_02818349_02838255 | NA | coding | downstream | 99427 | 2817620 ~ 2838255 (+) |
| CI01000092_02958119_02966042 | WRB | coding | downstream | 239831 | 2958024 ~ 2966463 (+) |
| CI01000092_02977237_02979350 | SH3BGR | coding | downstream | 259044 | 2977237 ~ 2979378 (+) |
| G305137 | NA | non-coding | upstream | 14995 | 2702765 ~ 2702979 (+) |
| G305071 | NA | non-coding | upstream | 100814 | 2616237 ~ 2617160 (+) |
| G305084 | NA | non-coding | upstream | 193789 | 2509042 ~ 2524185 (+) |
| G304987 | NA | non-coding | upstream | 255866 | 2461861 ~ 2462108 (+) |
| G305172 | NA | non-coding | downstream | 249 | 2718442 ~ 2718646 (+) |
| G305133 | NA | non-coding | downstream | 9110 | 2727303 ~ 2727705 (+) |
| G305180 | NA | non-coding | downstream | 16244 | 2734437 ~ 2734688 (+) |
| G305183 | NA | non-coding | downstream | 19319 | 2737512 ~ 2737868 (+) |
| G305187 | NA | non-coding | downstream | 29308 | 2747501 ~ 2747707 (+) |
| G304938 | NA | other | upstream | 399740 | 2317792 ~ 2318234 (+) |
| G303768 | NA | other | upstream | 1401451 | 1315443 ~ 1316523 (+) |
| G305584 | NA | other | downstream | 949115 | 3667308 ~ 3667965 (+) |
| G305596 | NA | other | downstream | 1008154 | 3726347 ~ 3863135 (+) |
