XLOC_010936 (cpne4a)


Basic Information

Item Value
gene id XLOC_010936
gene name cpne4a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 41345477 ~ 41465625 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00021382
TCCCCTCAAAGTCCGCGTACCCGCCGAAAGAGTGAAGCGCGTGAAGGGGAGGGACCCGCGCGCCACATGAACGCGCTGTACTTTACTTTCACTCATCTGCACAGCGGGTTGAGGATGGAGCTCGACTCTCTGTATGGAGCATATTTCTGCCCAGTGCTCTGTGTCTGATGACAAGCAGCGAAGCAACAATTTGCCTGGATTTAATTTTCATGTTCGTTAAAGCACAAGTGTCTCCTGAACCATGAGCGACATCTACGAGTCTGCAGCCAATTCTCTGGGCCTGTTCAGCAGCCCCTGCCTGACCAAAGTAGAGCTGCGGGTGGCCTGTAAAGGCATCTCAGACCGGGACGCCCTCTCCAAACCGGATCCTTGCGTGGTCATCAAAATGCAGTCCCATGGCCAGTGGCTTGAGGTGGACAGGACAGAGGTGATCCGGAGCTGTATAAACCCTACATTTTCAAAGGTTTTCACCCTGGACTTCTACTTCGAGGAGGTCCAGCGATTGCGCTACGAGCTCTACGACATTAGCAGCAGTCACAACGGCATGAGAGAGGCGGACTGTCTGGGAGCCATGGAGTGCACGCTGGGCCAAATCGTCTCCCAGAGAAAATTCAGCAAAGCTCTACTTAAACAGGGTAACACAGTCGGGAAATCGTCTATTATGATCACCGCTGAGGAGCTGACGGGAAATAATGATTATGTCGAGCTCTCATTCAGTGCCAGGAAGCTGGATGATAAGGATTTTTTCAGCAAGTCAGATCCGTTCTTAGAGATCTACAGGGTAAATGATGATGACAGCCAGCAGCTAGTGCACAGAACAGAGACTGTCATGAATAATCTCAACCCCGTGTGGAAGACCTTCAAAACGTCACTGAACTCACTCTGCAGTGGAGACCATGAAAGAATACTGAAGTGTACAGTGTGGGACTGGGACTCGAACGGAAAGCACGATTTCATAGGGGAGTTTCAAGCTACATTCAAAGAGATGCGATCAGCGATGGATGGAAAACAGGTCCAGTGGGAATGCATAAACCCCAAATACAAAGTCAAGAAGAAGAATTACAAGAACTCTGGGATTGTCATTCTGAACCAGTGCAAGATAATTAAGATGCATTCCTTCCTGGACTACATTATGGGTGGCTGCCAAATACAGTTTACAGTAGCGATTGATTTCACAGCCTCTAATGGGGATCCGAGGAACAGTTGTTCATTACACTACATCCACCCCTACCAGCCTAACGAGTATCTGAAAGCTTTAGTCGCAGTGGGGGAGATTTGCCAAGACTATGACAGTGACAAAATGTTCCCGGCGTTTGGCTTTGGTGCTCGGATACCTCCAGACTTCAAGGTTTCACATGACTTTGCAGTAAACTTCAACGAGGACAACCCAGAATGTGCAGGTATTCAGGGTGTGGTGGAGGCCTACCAGAACTGCCTTCCTAAAATTCAGCTTTATGGCCCCACAAACATTGCCCCCATCATCCAGAAAGTGGCTAACTTTGCCTCAGAGGAGATGCACACCAAAGAGGCCATGCAATACTTCatcctgctgatcctgacggacGGTGTGATCACAGACATGGCGGACACCAGAGAGGCCATCGTTCACGCTTCACACCTGCCCATGTCTGTCATCATCGTGGGGGTCGGAAATGCAGATTTCACTGATATGGAGATGCTGGATGGGGATGATGGGATCCTCCGCTCACCCAAAGGAGAACCAGTGCTGAGGGACATCGTACAGTTTGTGCCCTTCCGTAACTTCAAACATGCCTCTCCTGCTGCTTTGGCAAAAAGTGTCTTAGCTGAAGTCCCGAACCAGGTGGTGGACTATTATAACAGCAAGGGGATCAAGCCCAAGTGCCCCAGCGAGTTTGAGTCTTCCAGAACGTTTGGTCACTGAAGCGACCTGCTCTCCTCTTTTTACGAAAAACTAGCACGTCTGTGTGAATTTGAAGCCTAATCTGTTccactttgttttgtttgcatgCGTAGCCTGTGAGGCTTGCATAGGTGTTGCAATGCTACTGTTTCTATTATGTACATGTCGACATGTACAGACTTACACAACTACAAAGAAGCAAAAACATCTTACTGAAAGCATGATGACTGGGATTAgctgaaataaataattatatatatatatgggttatctgttttcttttatataaagGTTTAATGAGATTTTGCTAAATTTCGTAATGTTCTTACATTGTAAAGCATTTTGGATCTTAGAGAATGAATAGCTATTTGAACTAGACTGTCTGTGGACATTCaggctttctttctctctctctctctctctctctctctctctctctctctctctctttctctctattttttatttttattttttgcagatgCAGGGCCAGATGCATGTTTGTATTTTGCATGTTGATGATAAACCGACATCGTTTTTCTATCGGTTCCTTTCGGGGCCTGTTATTTGAGTTCATGTGAAGCTGCTCTTCTGGAAAATGTCCACAAATAAGACTTTAGAATGAAGTATTTTTTGGTAGAACTGAGTGATAATGTAACAAATTGTTTGAAAATAAAGTTTGTGTTATGAATGGTTCA
>TCONS_00021383
ATGAGCGACATCTACGAGTCTGCAGCCAATTCTCTGGGCCTGTTCAGCAGCCCCTGCCTGACCAAAGTAGAGCTGCGGGTGGCCTGTAAAGGCATCTCAGACCGGGACGCCCTCTCCAAACCGGATCCTTGCGTGGTCATCAAAATGCAGTCCCATGGCCAGTGGCTTGAGGTGGACAGGACAGAGGTGATCCGGAGCTGTATAAACCCTACATTTTCAAAGGTTTTCACCCTGGACTTCTACTTCGAGGAGGTCCAGCGATTGCGCTACGAGCTCTACGACATTAGCAGCAGTCACAACGGCATGAGAGAGGCGGACTGTCTGGGAGCCATGGAGTGCACGCTGGGCCAAGTGAGCAACCTTTATCACTCTCAATCTCTGCAGATCACCGCTGAGGAGCTGACGGGAAATAATGATTATGTCGAGCTCTCATTCAGTGCCAGGAAGCTGGATGATAAGGATTTTTTCAGCAAGTCAGATCCGTTCTTAGAGATCTACAGGGTAAATGATGATGACAGCCAGCAGCTAGTGCACAGAACAGAGACTGTCATGAATAATCTCAACCCCGTGTGGAAGACCTTCAAAACGTCACTGAACTCACTCTGCAGTGGAGACCATGAAAGAATACTGAAGTGTACAGTGTGGGACTGGGACTCGAACGGAAAGCACGATTTCATAGGGGAGTTTCAAGCTACATTCAAAGAGATGCGATCAGCGATGGATGGAAAACAGGTCCAGTGGGAATGCATAAACCCCAAATACAAAGTCAAGAAGAAGAATTACAAGAACTCTGGGATTGTCATTCTGAACCAGTGCAAGATAATTAAGATGCATTCCTTCCTGGACTACATTATGGGTGGCTGCCAAATACAGTTTACAGTAGCGATTGATTTCACAGCCTCTAATGGGGATCCGAGGAACAGTTGTTCATTACACTACATCCACCCCTACCAGCCTAACGAGTATCTGAAAGCTTTAGTCGCAGTGGGGGAGATTTGCCAAGACTATGACAGTGACAAAATGTTCCCGGCGTTTGGCTTTGGTGCTCGGATACCTCCAGACTTCAAGGTTTCACATGACTTTGCAGTAAACTTCAACGAGGACAACCCAGAATGTGCAGGTATTCAGGGTGTGGTGGAGGCCTACCAGAACTGCCTTCCTAAAATTCAGCTTTATGGCCCCACAAACATTGCCCCCATCATCCAGAAAGTGGCTAACTTTGCCTCAGAGGAGATGCACACCAAAGAGGCCATGCAATACTTCatcctgctgatcctgacggacGGTGTGATCACAGACATGGCGGACACCAGAGAGGCCATCGTTCACGCTTCACACCTGCCCATGTCTGTCATCATCGTGGGGGTCGGAAATGCAGATTTCACTGATATGGAGATGCTGGATGGGGATGATGGGATCCTCCGCTCACCCAAAGGAGAACCAGTGCTGAGGGACATCGTACAGTTTGTGCCCTTCCGTAACTTCAAACATGCCTCTCCTGCTGCTTTGGCAAAAAGTGTCTTAGCTGAAGTCCCGAACCAGGTGGTGGACTATTATAACAGCAAGGGGATCAAGCCCAAGTGCCCCAGCGAGTTTGAGTCTTCCAGAACGTTTGGTCACTGA
>TCONS_00021384
TACATTACAAAACGCTATTTTGTGTGTACATGCATTGCACATTATTTAATTAGTAACTAACGAGTTGCTTTACCTGTAGTTCCTCCCCTCAAAGTCCGCGTACCCGCCGAAAGAGTGAAGCGCGTGAAGGGGAGGGACCCGCGCGCCACATGAACGCGCTGTACTTTACTTTCACTCATCTGCACAGCGGGTTGAGGATGGAGCTCGACTCTCTGTATGGAGCATATTTCTGCCCAGTGCTCTGTGTCTGATGACAAGCAGCGAAGCAACAATTTGCCTGGATTTAATTTTCATGTTCGTTAAAGCACAAGTGTCTCCTGAACCATGAGCGACATCTACGAGTCTGCAGCCAATTCTCTGGGCCTGTTCAGCAGCCCCTGCCTGACCAAAGTAGAGCTGCGGGTGGCCTGTAAAGGCATCTCAGACCGGGACGCCCTCTCCAAACCGGATCCTTGCGTGGTCATCAAAATGCAGTCCCATGGCCAGTGGCTTGAGGTGGACAGGACAGAGGTGATCCGGAGCTGTATAAACCCTACATTTTCAAAGGTTTTCACCCTGGACTTCTACTTCGAGGAGGTCCAGCGATTGCGCTACGAGCTCTACGACATTAGCAGCAGTCACAACGGCATGAGAGAGGCGGACTGTCTGGGAGCCATGGAGTGCACGCTGGGCCAAGTGAGCAACCGCCTCCATCATGCATTTATTCCAGCAGCCATGTGTGTGATTATTATAGTTTGTCTTGCTTTGTTTGGCAATGCTCGTTTTGTAACAGGATCTCTATGTGATTGTTGATTGCACACAGTCAGGGAAGATTGAGACCGGCACTGCGCCCAAATCAGATGAAGCCtcctaattaaataatcacaCCAACAACCGTTAAGAGCATTTCCGGACATTTTATGACTGATTGAATCTTGAAACGTGAGATGTCTAGCTCAGTGTGGGCCGACGGACGGTCCAGATAGGCCACGCAACTCTCTTATCTGCAGTGTGAGCAAT

Function

symbol description
cpne4a Predicted to enable calcium-dependent phospholipid binding activity. Predicted to be involved in cellular response to calcium ion. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in ventral habenular nucleus. Orthologous to human CPNE4 (copine 4).

GO:

id name namespace
GO:0071277 cellular response to calcium ion biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005544 calcium-dependent phospholipid binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-427 Predicted to enable calcium-dependent phospholipid binding activity. Predicted to be involved in cellular response to calcium ion. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in ventral habenular nucleus. Orthologous to human CPNE4 (copine 4).

Ensembl:

ensembl_id ENSDARG00000101095

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00021382 False 2580 mRNA 0.46 16 41345477 41465542
TCONS_00021383 False 1623 mRNA 0.50 14 41346154 41439659
TCONS_00021384 True 999 mRNA 0.50 3 41413606 41465625

Neighbor

gene id symbol gene type direction distance location
XLOC_010935 ptpn23a coding downstream 213899 41112346 ~ 41131578 (-)
XLOC_010934 NA coding downstream 236765 41103491 ~ 41108712 (-)
XLOC_010932 si:dkey-201i6.8 coding downstream 285558 41032961 ~ 41059919 (-)
XLOC_010933 NA coding downstream 295583 41042994 ~ 41049894 (-)
XLOC_010931 KCNV1 coding downstream 340746 40991911 ~ 41004731 (-)
XLOC_010937 cmtm6 coding upstream 1563 41467188 ~ 41488023 (-)
XLOC_010938 cmtm7 coding upstream 30045 41495670 ~ 41503925 (-)
XLOC_010939 siglec15l coding upstream 39630 41505255 ~ 41515717 (-)
XLOC_010940 NA coding upstream 57413 41523038 ~ 41529013 (-)
XLOC_010941 rpp25l coding upstream 66991 41532616 ~ 41535713 (-)
XLOC_010626 CR392024.2 misc downstream 20450302 20895112 ~ 20895175 (-)
XLOC_010930 NA non-coding downstream 387844 40949868 ~ 40957633 (-)
XLOC_010929 BX324007.1 non-coding downstream 662774 40681928 ~ 40682703 (-)
XLOC_010927 BX324007.2 non-coding downstream 761427 40521738 ~ 40584050 (-)
XLOC_010942 BX005012.3 non-coding upstream 76454 41542079 ~ 41542863 (-)
XLOC_010944 NA non-coding upstream 219243 41684868 ~ 41737998 (-)
XLOC_010951 CR318611.1 non-coding upstream 416820 41882445 ~ 41882560 (-)
XLOC_010953 BX649388.3 non-coding upstream 482450 41948075 ~ 41949116 (-)

Expression


Co-expression Network