Gene
RNA
| Item | Value |
|---|---|
| gene id | G305206 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000092 |
| NCBI id | null |
| chromosome length | 5370156 |
| location | 2773011 ~ 2786207 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU346799 | True | 474 | lncRNA | 0.43 | 4 | 2773011 | 2786207 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000092_02739990_02745224 | NA | coding | upstream | 27764 | 2739990 ~ 2745247 (+) |
| CI01000092_02721458_02724152 | NA | coding | upstream | 48859 | 2721393 ~ 2724152 (+) |
| CI01000092_02661524_02662121 | NA | coding | upstream | 110838 | 2661383 ~ 2662183 (+) |
| CI01000092_02470059_02471839 | OR112-1 | coding | upstream | 301060 | 2469352 ~ 2471951 (+) |
| CI01000092_02418597_02419541 | NA | coding | upstream | 353015 | 2418408 ~ 2419996 (+) |
| CI01000092_02818349_02838255 | NA | coding | downstream | 31413 | 2817620 ~ 2838255 (+) |
| CI01000092_02958119_02966042 | WRB | coding | downstream | 171817 | 2958024 ~ 2966463 (+) |
| CI01000092_02977237_02979350 | SH3BGR | coding | downstream | 191030 | 2977237 ~ 2979378 (+) |
| CI01000092_03007267_03029327 | NA | coding | downstream | 221060 | 3007267 ~ 3029327 (+) |
| CI01000092_03080030_03082866 | PCP4 | coding | downstream | 293355 | 3079562 ~ 3083624 (+) |
| G305188 | NA | non-coding | upstream | 24417 | 2748361 ~ 2748594 (+) |
| G305187 | NA | non-coding | upstream | 25304 | 2747501 ~ 2747707 (+) |
| G305183 | NA | non-coding | upstream | 35143 | 2737512 ~ 2737868 (+) |
| G305180 | NA | non-coding | upstream | 38323 | 2734437 ~ 2734688 (+) |
| G305133 | NA | non-coding | upstream | 45306 | 2727303 ~ 2727705 (+) |
| G305219 | NA | non-coding | downstream | 10479 | 2796686 ~ 2796940 (+) |
| G305220 | NA | non-coding | downstream | 12427 | 2798634 ~ 2798880 (+) |
| G305230 | NA | non-coding | downstream | 37072 | 2823279 ~ 2823507 (+) |
| G305244 | NA | non-coding | downstream | 52855 | 2839062 ~ 2839329 (+) |
| G305164 | NA | non-coding | downstream | 60659 | 2846866 ~ 2849443 (+) |
| G304938 | NA | other | upstream | 454777 | 2317792 ~ 2318234 (+) |
| G303768 | NA | other | upstream | 1456488 | 1315443 ~ 1316523 (+) |
| G305584 | NA | other | downstream | 881101 | 3667308 ~ 3667965 (+) |
| G305596 | NA | other | downstream | 940140 | 3726347 ~ 3863135 (+) |
