XLOC_010940


Basic Information

Item Value
gene id XLOC_010940
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 41523038 ~ 41529013 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00022225
agaagTACACTGGTCGCTGAAGGAGGAACTGCCGAGGCTGAAAACAATCATGTTGGCTGTTCTGTTGACCGCTTTAATGTTTAGTCAAGGGCTTTCAATGGACAGCCGTGGGACGAGTTTCATCACAGCATTCCCCGAGAACGTTGCCTTTTATTTTCAAAAGACCTATAACCTATTGAAAATCACCACCCTTCACCCAAACACGGCTGTCAGTGTCATTGAAATGGCGAGTGGCAACATCACCAATTCAGCCGCTGGCAACAACGGAACCATTTTGACTTTGAATTTCTCAAAGGATGCTGAAGAATACCAGTTTGCATTCTCCAATAAGTCTATTCGAATCACCAGCGATAAAAACATCACAGTGCTTTCTATGAGTGGATGGGAGGGTCGATTTCAGTCCCGTGTTGTTCAGCCTGATCAAAACCTCAGAACGGTGTATCAGATCCCTGCTCTAAACTACACCAAGATTGCTGCATCCTTTAACCTTTCAGTGGCATCAAATGTCACGTTTCTCAATTTTAGGCTGATGATTATCAATGCAGTGGACGGAGACAACAGCGTCACCATTAAATATGGAGACGGAAGTGGACAAAGCCAAGATACCATAGCACTTGGCCCTTTTGAACTCTTCCAGATGCAGATTAATGGGTCGGAGGGAGAAATAACTGCGACGGATGAAGTGGCTGTGATTCTGACCCATCCCTGCTTGGATACTGTTAACTGCTCATGCAACATGGTGGTGAACCAGCTCAAACCCCAAGTATCTGATAGAAAGGTTGCCAGATTCCCTGTGCCATCTATTTTTGGTGTCAAGCAGCTGTTTGTGACAACAAATCAAGCCTTCAAAGTCTGTCAGGGTGTATTTAATGATGCAAATAGTATTCAAGTCCAAAAGTCTGTAGACATCTTGCCCCTCTTTCCAAATTTCCTGAGCTCGGCCTTGCTTATTTCTACCAACATTGGTGTTTCCCTCCGACTGATCAGTCCAGGACTCATTCTTGACCTCATGCCGACAAGCATGTTTTCTGGCTGCTTTCTGGTAGACTTCAACTCTTCACGCTCTGGAGCTTTGGTGATTGCTAATACATCCAGCACTACTGGGGTGAAAATGAACgatcagcctttaaatgtcatatgGTACCCTTTGAATGGCACCGAGTACTCTTGGGCTTTGGTGGAGGCACAAGTCATTGGAACCATCTGGCATCCGAATACAAAGATTGGTGTATATATGACACAACGCTTGGATTCCAACATCATCTATGGCAGCCAAGCAGTAGCTTTAAATATGGACTTAGATCAGAATGGCTGTCTGCTGACTCCGGAGATATTTGTGCTTGGTCAGGACAGCATGAACTGGTCCATGTCCCTTCAGTACTGCTCAGATAAGTATGACCAGCTCGCCACACTCAATGCTAAATCTGCACAGGATAAGATGGTCTTGAACATGTCACTGATACAACCCACGTTGGGCTGGATTGGTCTACGCCGCAGCCTGTTCACGACTGAGTGGTACTGGAGCAACAATGTGAATGTGAACTTCACTTTCTGGGAGCTCGGACAGCCTGATAAACCAGAGAAAGGCTTGTGCGCTTCGGTTGCGCTGGACCCTAGCAAGAAGTTCACATGGCAGAGTGCACGCTGCTGCTCTGAAAATAAACCCGTGTGCTATAGTGgccaaaaatatttcatttacagtCGTACtacaaaacaaatgttgtcttaa
>TCONS_00021390
agaagTACACTGGTCGCTGAAGGAGGAACTGCCGAGGCTGAAAACAATCATGTTGGCTGTTCTGTTGACCGCTTTAATGTTTAGTCAAGGGCTTTCAATGGACAGCCGTGGGACGAGTTTCATCACAGCATTCCCCGAGAACGTTGCCTTTTATTTTCAAAAGACCTATAACCTATTGAAAATCACCACCCTTCACCCAAACACGGCTGTCAGTGTCATTGAAATGGCGAGTGGCAACATCACCAATTCAGCCGCTGGCAACAACGGAACCATTTTGACTTTGAATTTCTCAAAGGATGCTGAAGAATACCAGTTTGCATTCTCCAATAAGTCTATTCGAATCACCAGCGATAAAAACATCACAGTGCTTTCTATGAGTGGATGGGAGGGTCGATTTCAGTCCCGTGTTGTTCAGCCTGATCAAAACCTCAGAACGGTGTATCAGATCCCTGCTCTAAACTACACCAAGATTGCTGCATCCTTTAACCTTTCAGTGGCATCAAATGTCACGTTTCTC

Function

GO:

id name namespace
GO:0042738 exogenous drug catabolic process biological_process
GO:0006082 organic acid metabolic process biological_process
GO:0044281 small molecule metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0008395 steroid hydroxylase activity molecular_function
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen molecular_function
GO:0016712 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen molecular_function
GO:0004497 monooxygenase activity molecular_function
GO:0005506 iron ion binding molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0046906 tetrapyrrole binding molecular_function
GO:0048037 obsolete cofactor binding molecular_function
GO:0020037 heme binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000087679

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00022225 False 1729 lncRNA 0.46 3 41523038 41529013
TCONS_00021390 True 517 processed_transcript 0.45 2 41524790 41529013

Neighbor

gene id symbol gene type direction distance location
XLOC_010939 siglec15l coding downstream 7321 41505255 ~ 41515717 (-)
XLOC_010938 cmtm7 coding downstream 19113 41495670 ~ 41503925 (-)
XLOC_010937 cmtm6 coding downstream 35015 41467188 ~ 41488023 (-)
XLOC_010936 cpne4a coding downstream 57413 41345477 ~ 41465625 (-)
XLOC_010935 ptpn23a coding downstream 391460 41112346 ~ 41131578 (-)
XLOC_010941 rpp25l coding upstream 3603 41532616 ~ 41535713 (-)
XLOC_010942 BX005012.3 coding upstream 13066 41542079 ~ 41542863 (-)
XLOC_010943 atp2c1 coding upstream 56632 41585645 ~ 41667101 (-)
XLOC_010944 NA coding upstream 155855 41684868 ~ 41737998 (-)
XLOC_010945 si:dkey-199f5.8 coding upstream 211352 41740365 ~ 41787421 (-)
XLOC_010626 CR392024.2 misc downstream 20627863 20895112 ~ 20895175 (-)
XLOC_010934 NA non-coding downstream 414326 41103491 ~ 41108712 (-)
XLOC_010933 NA non-coding downstream 473144 41042994 ~ 41049894 (-)
XLOC_010930 NA non-coding downstream 565405 40949868 ~ 40957633 (-)
XLOC_010929 BX324007.1 non-coding downstream 840335 40681928 ~ 40682703 (-)
XLOC_010927 BX324007.2 non-coding downstream 938988 40521738 ~ 40584050 (-)
XLOC_010951 CR318611.1 non-coding upstream 353432 41882445 ~ 41882560 (-)
XLOC_010953 BX649388.3 non-coding upstream 419062 41948075 ~ 41949116 (-)
XLOC_010954 BX649388.1 non-coding upstream 426842 41955855 ~ 41965309 (-)

Expression


Co-expression Network