G305562



Basic Information


Item Value
gene id G305562
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information


Item Value
chromosome id CI01000092
NCBI id null
chromosome length 5370156
location 3598889 ~ 3599275 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence


>TU347191
AGAGAATCTTATCTACTTTTTTACCACAAATGCTCATCTTGCACTGCTCTACGATGCGTCACGCATTACGTAATCACGTTGGAAAGGTCACGCGTGACGTAGGTGGAAGTACCGCGGTAGGTATCTCATTTTCTCCTCCAACTTAAAAATCGCCCGACATCGTTGTTTTACCTTTTTTTTGTAAAGGCTGTTCGACTTAGTCTTTGCACGTTCACTTTGTAGACACTGGATCGGTACTTCCGCCTACGACACGTGTGACCTTTCCAACATGATTACGCAATGCGTGACACATCGCAGAGCAGTGCAAGATGAGCAGTTGTGGTTAAAAATTATATAATTTTTTTCTTTTTTTAGAAAATGGCCGATGGTTTCTCTAGATAAGACCCT

Function


GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA


RNA id representative length rna type GC content exon number start site end site
TU347191 True 387 lncRNA 0.42 1 3598889 3599275
Loading

Neighbor


gene id symbol gene type direction distance location
CI01000092_03551674_03573437 NA coding upstream 25397 3551674 ~ 3573492 (+)
CI01000092_03532136_03542761 SIRT2 coding upstream 56006 3532136 ~ 3542883 (+)
CI01000092_03478431_03479274 GJD1A coding upstream 119096 3478431 ~ 3479793 (+)
CI01000092_03433283_03442900 GLTSCR2 coding upstream 155929 3433283 ~ 3442960 (+)
CI01000092_03329908_03348045 NA coding upstream 250570 3329908 ~ 3348319 (+)
CI01000092_03693715_03694890 NA coding downstream 91275 3690550 ~ 3695228 (+)
CI01000092_03725440_03728304 NA coding downstream 123768 3723043 ~ 3728325 (+)
CI01000092_03816152_03827312 AXL coding downstream 216877 3816152 ~ 3827361 (+)
CI01000092_03828205_03831437 NA coding downstream 228930 3828205 ~ 3831775 (+)
CI01000092_04205017_04213986 NA coding downstream 605742 4205017 ~ 4214128 (+)
G305561 NA non-coding upstream 123 3597712 ~ 3598766 (+)
G305558 NA non-coding upstream 11780 3586872 ~ 3587109 (+)
G305535 NA non-coding upstream 22936 3507282 ~ 3575953 (+)
G305529 NA non-coding upstream 153772 3444826 ~ 3445117 (+)
G305499 NA non-coding upstream 198401 3399821 ~ 3400488 (+)
G305565 NA non-coding downstream 58789 3658064 ~ 3661242 (+)
G305581 NA non-coding downstream 63022 3662297 ~ 3662516 (+)
G305583 NA non-coding downstream 67463 3666738 ~ 3667015 (+)
G305585 NA non-coding downstream 68732 3668007 ~ 3668223 (+)
G305590 NA non-coding downstream 72168 3671443 ~ 3674407 (+)
G304938 NA other upstream 1280655 2317792 ~ 2318234 (+)
G303768 NA other upstream 2282366 1315443 ~ 1316523 (+)
G305584 NA other downstream 68033 3667308 ~ 3667965 (+)
G305596 NA other downstream 127072 3726347 ~ 3863135 (+)

Expression


G305562 Expression in PRJCA010000

Bar chart with 27 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 8.
End of interactive chart.

G305562 Expression in each Bioproject

Bar chart with 35 bars.
G305562 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 100.
End of interactive chart.

Co-expression Network