G305596


Basic Information

Item Value
gene id G305596
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000092
NCBI id null
chromosome length 5370156
location 3726347 ~ 3863135 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU347240
TATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTTTTTTTTTTTTTATTATGTTTATTATTTTCATTTCATTGAACATTGAAAATCAGTTTTTAACAAAAAGCAGCTTAACAAAGGATTTTTGCTAGGCATTTTTTGAATGAACAGGTTTCAGTGTTCTTTTATTCATATCTGTGTTTGCCCATTAGAGAGGATGTGAGTCCTGTAGCGGTGGGAAATGTGTAAATAGTGCATATGAGTGTATTCGTGTATTGTGTGCTTCGAGTAAAGGTTGGTTATGCTGAGAAAAGCCTTCCGGATGACGGGTCGGGGTGTCGGTGCTTGGCGCAGGAGGCAAGGAAGAAGGCAGGGTGGATGGTGTAAAAAATGGCTAGTTTACTCCTTGCTAAGAGACTTTTGGACAGCTGCAAATATTGCCTCAAAGTGAGGCTTCACCTGCTCGCCCAATTCGGTCATCTTTTTCCTCAGTTCTCCAGATCGCACGCTCTCGCGGAACTCCAAGGCTCCCTTTTCCACCTGATCCTTATATTCCTGGATGTAGGGATCCAGCTGGGTCTTCACTTCCTGCGCATACGCAGTCAACTTTTCGCGCACAGCTTCCAGGATGGGCGTCAGCTTGGACTTGGTCTCCTCCCAGTTGGTTCCAATCTTCTCCTTCAAGCTCTTGATCACCGGCTCCAGCTTGGTTTTGACTTCCTCCATGTGCTCACGCTGCTTGACCAAGTACTCGTCGAGGAAAGGCTTCAGCTCGTCTCTGTACTCCTCGAAGTGCTTCTGCAGAACATGCCTGAGCTCCTCACGCATGGGCGCGATCTGCTTGCGGAGGTCCTCGATGTCCTTGGTCAGCTTCTCACGTTGTGGTGCAGAGGCTTCCAGCACATGGGTACCAATTGGGGAGATGGCTTGAAAAGCGTGCTCAAAGTAGCCATGGAGGTTGTCCACGGACTGGCCCAGGAATTCCCTAAACAGAACAAGGATTTAGGTTGTCATTTGTCATTGGAAAAATGGCGTTCTTTACAATGGAAGGTGTCCCCAGCTCATAGCAACATTGGGATAATCAGT
>TU347248
CATCGGTTGGACTTCTGAGATCTCTAGCATGTTATACTGGCCAGTTCTTGTTATTAAACATTCTGAAATGATTGAGATCAGACAATTACTGTGTCCACTTGGCTGTTTTTTCTGAGAGTCTACCGGCAGCTTTGTCAATGGATAAAAAATATTTTGGAGAGAGTCTTTCTGAGTAAGTTTGTTTAATGGCAGAGACACCTGAAGTTCTCCAGATCGCACGCTCTCGCGGAACTCCAAGGCTCCCTTTTCCACCTGATCCTTATATTCCTGGATGTAGGGATCCAGCTGGGTCTTCACTTCCTGCGCATACGCAGTCAACTTTTCGCGCACAGCTTCCAGGATGGGCGTCAGCTTGGACTTGGTCTCCTCCCAGTTGGTTCCAATCTTCTCCTTCAAGCTCTTGATCACCGGCTCCAGCTTGGTTTTGACTTCCTCCATGTGCTCACGCTGCTTGACCAAGTACTCGTCGAGGAAAGGCTTCAGCTCGTCTCTGTACTCCTCGAAGTGCTTCTGCAGAACATGCCTGAGCTCCTCACGCATGGGCGCGATCTGCTTGCGGAGGTCCTCGATGTCCTTGGTCAGCTTCTCACGTTGTGGTGCAGAGGCTTCCAGCACATGGGTACCAATTGGGGAGATGGCTTGAAAAGCGTGCTCAAAGTAGCCATGGAGGTTGTCCACGGACTGGCCCAGGATTACTTGTAGTCTTTGAACTCTGTGTCATCGAGGTGAGTGAGGGACTTGTGTGCAGACTGCTTTAACTGATCTGCATAAACCTGGAGCACAGACTTCACATGATCCAGATGTGACGGTGCTTCGTCCTGCAGGAAACGGGCCTGGCAACCTGGATGAAGGAAATGTCAGTTCATAAGCTTGAGTTTGGAACAAAAGGCTGGGATTCTGATTACTTTAACTAAAAAAAGCCAAATTGTTTGAGTTTTCTTCCCAGCCAGCAACATAGTGTCGGCCCAGATCTGGCCCACATCTGGTACATGTGGATTACACCTGGACCAGATGTGGGCCGGATCTGGGCTGACACTACGTTGCTGGCTGGGAAGAAACCTCAAACAATTTGGCTTTTTTCAGAGAAGCAATGGGTTTACATACCTGCCAGCAAAACAGTGAGGGCGAGGGCTACGAACCTCATCATGGATCTGGGTCAAAAACAAACATCAGATATTGTTAATATAATTGAAGCAGCTCACAATGAATGGATGGGTTTGAGATTTTTAACCAAAGGGAGAGTGGACACAATTCAGCATGATTCATTCTAATGTTATTAAACCTTTTAGTACTGTGATTGTTCTAGATTGATACTACAACTATTGCCTACTCAGGCTGCTCGGGAAAGGTTTACCCTACGACATATGTCAGCCTATTAGACTAGACTCTAATTCATCCCAGATTAGACAGAGTTACAAAGACTTCACAACCAGATTAGCTCTCAACATAATCTAAAATCCTTAGATTAACTTGGACACATTGATGGTGGACCTGGAGAACTGAGCAGACTTCAGGCAGTCGAGGAGTAGAAGGGCTACAATAATTTATCATATTTTATCAATAAGGCTTCGCCATTAGTCTTCAAACCAAAACAATTACTTTTTGTACTTCTAACAATAAAAATCAACTAAAGTATAAAAAGTATAATTTGATACAAATTTTGTTGTTTTGCTAACGGTCCAGCTGTTTCCTGACAAAAGCCTATCATGAGTGGCTCTCATGTCCGAGGTCGGGCTGCTTACCTGTTGATGTAGCTGGTC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU347240 False 1077 TUCP 0.45 3 3726347 3861333
TU347248 True 1760 lncRNA 0.45 3 3849481 3863135

Neighbor

gene id symbol gene type direction distance location
CI01000092_03828205_03831437 NA coding upstream 17706 3828205 ~ 3831775 (+)
CI01000092_03816152_03827312 AXL coding upstream 22120 3816152 ~ 3827361 (+)
CI01000092_03725440_03728304 NA coding upstream 121156 3723043 ~ 3728325 (+)
CI01000092_03693715_03694890 NA coding upstream 154253 3690550 ~ 3695228 (+)
CI01000092_03551674_03573437 NA coding upstream 275989 3551674 ~ 3573492 (+)
CI01000092_04205017_04213986 NA coding downstream 341882 4205017 ~ 4214128 (+)
CI01000092_04218446_04223477 NA coding downstream 355311 4218446 ~ 4224664 (+)
CI01000092_04284298_04291859 NA coding downstream 421163 4284298 ~ 4291859 (+)
CI01000092_04335830_04347365 MED17 coding downstream 472695 4335830 ~ 4347554 (+)
CI01000092_04355642_04374319 NA coding downstream 491730 4354865 ~ 4374322 (+)
G305599 NA non-coding upstream 99010 3733350 ~ 3750471 (+)
G305591 NA non-coding upstream 166858 3682257 ~ 3682623 (+)
G305589 NA non-coding upstream 169993 3677883 ~ 3679488 (+)
G305588 NA non-coding upstream 171710 3676769 ~ 3677771 (+)
G305590 NA non-coding upstream 175074 3671443 ~ 3674407 (+)
G305655 NA non-coding downstream 2157 3865292 ~ 3865638 (+)
G305605 NA non-coding downstream 19554 3882689 ~ 3906909 (+)
G305662 NA non-coding downstream 43855 3906990 ~ 3907365 (+)
G305663 NA non-coding downstream 46628 3909763 ~ 3910933 (+)
G305664 NA non-coding downstream 54197 3917332 ~ 3917686 (+)
G305584 NA other upstream 181516 3667308 ~ 3667965 (+)
G304938 NA other upstream 1531247 2317792 ~ 2318234 (+)
G303768 NA other upstream 2532958 1315443 ~ 1316523 (+)
CI01000092_03532136_03542761 SIRT2 coding upstream 183464 3532136 ~ 3542883 (+)
CI01000092_03478431_03479274 GJD1A coding upstream 246554 3478431 ~ 3479793 (+)
CI01000092_03433283_03442900 GLTSCR2 coding upstream 283387 3433283 ~ 3442960 (+)
G305585 NA non-coding upstream 58124 3668007 ~ 3668223 (+)

Expression


Co-expression Network