G306089


Basic Information

Item Value
gene id G306089
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000092
NCBI id null
chromosome length 5370156
location 3742480 ~ 3743248 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU347795
CTTGTGCAGATGTTTACTAATCAAGAGGTCAAGAGGTCAAGAAGCATTTATTTATCATTTGCATAGTTAATACTAGGGGACAAGGCTCAGACATACAGTGACAATAACAGGATCATACATACATAATCAAAAAAAAAAAAAAAAAAGTAAACATGAACATACAGGGGAAGAGAAAAAAGAAAAAACATAAGTGGAGGGCACTGAGATATTAAAGTGGCATGTGCTGTTCCACAGGCAGAACAATAAATGCAGACAGAGCAATAAATACAAATAAGTGGCAGTAATAGATACGATAAGGGTAGACAGTGTTAAGAGTATTAAGTAGTCCTGAGGTACTGAGATAAGAATACTGGGGTAGATCAGTGTCCAGTGTAAAGTGTCACAGAGCTACATGAAAAAATATAAAAAGTGGCATTACAATACAATAAATACTAAATCTTAAGAGCATTAAGTATTCCTGAGTAAGAAATCTCAGTATCCAAAGTGGCAGAAGTAAAGTGTATAAAATTAGCAGTAAGTGATTGCAGGTCTAGATGAAGGACAGCTGGCTGTTAAGCAGTCTGATGGCTTGAAGATAAAAGCTGTTCTTCAGTCTGGTTGTCCGTGATCAGATGGATCGTAAGCGTCTGCCAGACGGCAGTGTAGCAAACAGGTGGTGAGCAGGATGAGTGCGATCCTTGATGATGCTACAGGCCTTTCTCAGGCAGCATGTCTTATAAATGTCCTGTAAGGCTGGGAGTTTAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU347795 True 744 lncRNA 0.38 2 3742480 3743248

Neighbor

gene id symbol gene type direction distance location
CI01000092_03702024_03712418 NA coding downstream 30062 3700946 ~ 3712418 (-)
CI01000092_03682820_03688497 NA coding downstream 53949 3682263 ~ 3688531 (-)
CI01000092_03652598_03660979 ECH1 coding downstream 81376 3652598 ~ 3661104 (-)
CI01000092_03630767_03645397 PRSS16 coding downstream 96324 3630626 ~ 3646156 (-)
CI01000092_03614992_03615400 NA coding downstream 125497 3614437 ~ 3616983 (-)
CI01000092_03750015_03753913 CYP2Y3 coding upstream 5992 3749240 ~ 3753976 (-)
CI01000092_03762168_03785262 NA coding upstream 17572 3760820 ~ 3785407 (-)
CI01000092_03841542_03853786 BACE1 coding upstream 97089 3840337 ~ 3853992 (-)
CI01000092_03855138_03858761 TBX10 coding upstream 111890 3855138 ~ 3858761 (-)
CI01000092_03860647_03862519 NA coding upstream 117184 3860432 ~ 3863147 (-)
G306083 NA non-coding downstream 16803 3725027 ~ 3725677 (-)
G306010 NA non-coding downstream 64712 3676767 ~ 3677768 (-)
G306017 NA non-coding downstream 68046 3671445 ~ 3674434 (-)
G305810 NA non-coding downstream 143751 3597328 ~ 3598729 (-)
G306120 NA non-coding upstream 271537 4014785 ~ 4015061 (-)
G306121 NA non-coding upstream 282516 4025764 ~ 4026076 (-)
G306123 NA non-coding upstream 284126 4027374 ~ 4027599 (-)
G306139 NA non-coding upstream 362717 4105965 ~ 4106251 (-)
G306142 NA non-coding upstream 368756 4112004 ~ 4116902 (-)
G306014 NA other downstream 62992 3677874 ~ 3679488 (-)
G305772 NA other downstream 1017536 2724594 ~ 2724944 (-)
G304459 NA other downstream 2510188 1231900 ~ 1232292 (-)
CI01000092_01086701_01097333 CLRN1 other downstream 2645562 1086404 ~ 1097333 (-)
G304369 NA other downstream 2683560 1058325 ~ 1058920 (-)
G306679 NA other upstream 753166 4496414 ~ 4505953 (-)
G306792 NA other upstream 1061147 4804395 ~ 4865973 (-)
G306902 NA other upstream 1410420 5153668 ~ 5154133 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G282184 NA non-coding CI01000071 null 3224251 ~ 3224611 (+)
striped catfish (Pangasianodon hypophthalmus) G269994 NA non-coding NC_047611.1 CM018557.1 15929940 ~ 15930641 (+)
mexican tetra (Astyanax mexicanus) G235022 NA non-coding NW_019170884.1 APWO02000482.1 229809 ~ 237889 (+)