G305704



Basic Information


Item Value
gene id G305704
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information


Item Value
chromosome id CI01000092
NCBI id null
chromosome length 5370156
location 4091538 ~ 4091789 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence


>TU347366
GAAGAATCCGAGAAGGAGCAACGCAGCCCTCCTGTTAGCCATCTCGCTCCAAAATGCACTGGCCCTCCCAGAATCAGCTGGTTTTATTCTCCAAGAGCTAATTACCACTTCAAAAATGTCTGAAAAAAAAAAATGAAGAGGGGAGGAAAAAAGAAAATGATACTGGACACGACGTAATTAAGAAAGGGCAAAGCCTTTGGTTCGATGGATCATTGCACTTTTTTCTCTTCTGTGTCTGGTGTTGCTGTTTTT

Function


GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA


RNA id representative length rna type GC content exon number start site end site
TU347366 True 252 lncRNA 0.42 1 4091538 4091789

Neighbor


gene id symbol gene type direction distance location
CI01000092_03828205_03831437 NA coding upstream 259763 3828205 ~ 3831775 (+)
CI01000092_03816152_03827312 AXL coding upstream 264177 3816152 ~ 3827361 (+)
CI01000092_03725440_03728304 NA coding upstream 363213 3723043 ~ 3728325 (+)
CI01000092_03693715_03694890 NA coding upstream 396310 3690550 ~ 3695228 (+)
CI01000092_03551674_03573437 NA coding upstream 518046 3551674 ~ 3573492 (+)
CI01000092_04205017_04213986 NA coding downstream 113228 4205017 ~ 4214128 (+)
CI01000092_04218446_04223477 NA coding downstream 126657 4218446 ~ 4224664 (+)
CI01000092_04284298_04291859 NA coding downstream 192509 4284298 ~ 4291859 (+)
CI01000092_04335830_04347365 MED17 coding downstream 244041 4335830 ~ 4347554 (+)
CI01000092_04355642_04374319 NA coding downstream 263076 4354865 ~ 4374322 (+)
G305730 NA non-coding upstream 2338 4088983 ~ 4089200 (+)
G305729 NA non-coding upstream 2601 4088738 ~ 4088937 (+)
G305728 NA non-coding upstream 3895 4087377 ~ 4087643 (+)
G305726 NA non-coding upstream 6754 4084557 ~ 4084784 (+)
G305725 NA non-coding upstream 9492 4081832 ~ 4082046 (+)
G305734 NA non-coding downstream 8681 4100470 ~ 4100727 (+)
G306154 NA non-coding downstream 46646 4138435 ~ 4138686 (+)
G306165 NA non-coding downstream 60702 4152491 ~ 4152770 (+)
G306173 NA non-coding downstream 69258 4161047 ~ 4161434 (+)
G306200 NA non-coding downstream 119819 4211608 ~ 4212050 (+)
G305596 NA other upstream 230205 3726347 ~ 3863135 (+)
G305584 NA other upstream 423573 3667308 ~ 3667965 (+)
G304938 NA other upstream 1773304 2317792 ~ 2318234 (+)
G303768 NA other upstream 2775015 1315443 ~ 1316523 (+)

Expression



Co-expression Network