XLOC_010952 (gramd1a)


Basic Information

Item Value
gene id XLOC_010952
gene name gramd1a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 41902949 ~ 41961194 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00021412
aattttaatattttgtaaataagaTGTTTTACGGTTCATTTTCTTAAGATATTACATGCTAAATTGTTTGGTCATTCAAATATTCAAAAATTTAGCAAGTACTATTATCCTATTGTTTGCTAATAGTATTAGCATCAAATATTCAATCATTTAGCAAGTACTATCATTTAGTACGCAAGTACTATTATCCtaattaaattgtaatatattcAAGTCTACATAGTTTATAAACAAGCAAATCTAAATTTTATAAATTTGTGTACATGTATGTCTTGGCCTCGCTTCACCCTTCTTACGGAGATTATGGCAACCTCTCCCAGAAAAACAGATTATGGAGACGGCCAGACCTCTCAGGATTATTATGCACTCTACAGACTCTATAATAAACTATAGCCACAGTAAAGCAATTTACCAGTTACCATAATCTGAATGATGCCCTTCATTTGAATGACTGTGCCAACTTTGGGCGTTCATTCCATCAGCAATGCTTTGCTATCCACTGTTATTGACTCAAGTGCTTCCACATAAACTCTAAGCATAATCCTCTATGGGCTGGCCCGGGTGTGTGGTGGTAAAGAGAGGGCCACTGCCTCAAACCGTGTTGATTCCCTCCTCCACACAGAACATCCTCTTTTCtcctccccctcctcctcctGGCCGTATGTAGGCTGCTGCTTTAGGAGAGCCGGGGGAGCTCGTGGTGGAGACCGCGGTGGTCTTTGCGTTTTGCAGGGGGTCTGGTACCTCGTTTGGGATGGGGATGTTTACCGATCGCGTTCTGCTGGACTAGAACGGGCTGCGGATGAACAGAGGACGCGGTGTCTCCACTGCATTGGGCTGCTTAATCTGAATGTACCGTCTGTTGTGTCGGCGCAGTGCCATATTGAGAGGCTACTGTAACATAAACGTGGACATCGCGCATTGAATTGAGAAAACACCCAATGACATGTTCGATACAGCCAGTAACTCTCCACGCAGCACACCCGGCAGCTCGCCCTCCTTACGCCGGCGTGTGTTGGGAGGCAGAGCCAGTGAAGGAGAGACGGCGGGAGAAAAAAGCGGTGGCGGTTCAGACAGCCCTCTGCCTCCCACTCCATCCTCATCCACCTCCTCCTACCCCCTCGCTGCACGTCACTTCACCCGCAATGCCAAGAAAATGCAGAGCTGGTATAATGTTCTCAGCCCTACATACAAACAGAGGAACGAAGACTTCCGTAAACTCTTTAAAAAGCTGCCCGATACAGAGCGTCTCATAGTGGATTACTCATGTGCACTTCAGAAGGACATTCTACTCCAGGGTCGTCTCTACCTGTCAGAGAACTGGCTCTGCTTTTATAGTAATATCTTCCGATGGGAGACTACGATAACCATACTTCTGAAAGACGTGACCAATCTGACCAAGGAGAAGACGGCCAAGCTCATCCCGAACGCCATCCAGATCAGCACTGAAAACGAGAAGCACTTCTTCACGTCATTTGGGGCAAGGGATCGCAGCTACATGATGATCTTCAGACTATGGCAGAACGCACTAATGGATAAGACTCTGTCTCCTAAGGAACTGTGGCACATCGTTCACCAGTGTTACGGCACTGAGCTCGGCCTGACCAGTGAAGATGATGACTACGTCTCCCCTACTGCTGAACATATGAACGGCCTGCTGCCCGGAGAGGAGCCGGTCTCCGTCACTGACCTGCTGGATCTGGGATCAGTGCCGGTGGCTCCAGCGAGCTCCTCTCCACCCTCATCTGCCTCAGTTCTTCCATGCGCTTCAGGATCTTCTCCACCATCTTCCTCGTCCTCCTCTCAGCCTGTGGAGGTGCCGTCTATTCGGGCCAGCATTGACCCAGAGCCCAGTCCACCCAGTTCCCAGAGCTCACTGCCCCCGGTCACAAACACTGGAGCTGTCCCGGCCTCAGTAattttaaaAGAAGGCGGGGACAGCCAGTCAGAATCAGCCAATCACTCACTTCAGTCTCCTCCCTCGATCCCACACAACCTGGGAAACCTCTCATCATTGGATATGACCAATGATGAGGACCTCCCAACTGACCCAAGCAATTCCTCTGACACTCAGGAAGAGAGTGAGGTGGAGTCCTTCTGTGCGGACCTCAACGGCCGATTACATATTAATACAGTCGTTCGCATGGGTGTGGACAAACTCCACGATCTTCTGTTCTCAGACACACACTTCATACAGCACCTCTTCTCACAGCGTCACTTCACTGATCTGTCAGTGCACGAGTGGCAGCAGGACAGCAGCAGCGGGAGCAGCAGTAGAGTTCTGAGTTACACCATCGCCATCAACAACCCGCTCGGCCCCAAAACTGCCCCTGTGGTGGAAACACAGACTCTCCATAAGAGCAGCTCCCGGAGCGAGTGTTACGTGGTGGACTCGGAGGTCATCACCTCAGGCATCCCATACCAGGACTACTTCTACACTGTACACAGATACTGCCTGACCTCCGTCAACAAGCACAAGAGCCGCCTCAGGGTCTCGTCTGATATCTGCTACAGGAAGCAGCCCTGGAGTCTCGTCAAAGCGCTTATAGAGAAGAACACTTGGAGCGGCATTGAGGAGTATTACAGACACTTGGAGATGGAGGTGTGTAAGCTGGAGACGCTCTTGCAGACGGAGGTTACTGTAGTAAGTGCTGGTGAAATGCCCTCGCCAGACTCCACCAAGACGCCTCCCGGCCTGCGCAGGCGCAAGCGCACCTGTCCCCGACGAGCAGGAGAGCGGGACAGAGACAGAGAGGCAGCTGGAGGAGGAGAACGGGGAGACAGAATCACAGATGAACGGGACAGGAGGGAAGCCGGTGGTCAATATATGAAATTAGGAGAGAGGTGGCGTGCTGGAGGtggcagcaacaacaacagcattTCAACCATCCTGCTCATCGTCAGCTTCATGATCTGTGTCAGTTTGGTGGTTCTGGTGGCTCTGAACATGATGCTGTTTTACAAACTGTGGGCGCTGGAGCGGGCCGCACATACGCTGGAGACCTGGCACTCATACTCTTTAACTGACAGGTATGATGAAGCTAATCCTCTTCCTCAGTCAGCTGGAGAGTGGGCTCAGGTCCTGCAGCTCCAGAGGCAGTTTCATCAGGCCCAGATGAACAAGTGGCAGCAGATCTTACAGTCGTCTGTCACACTTCTGGATCAGATGAAGCAGTCTCTGGAGAAGCTCCACAGAGGAATGATTCCTCCTGAGGGGCAGCAGGAGTCTGATCCCGAACCGGACACACTGGCGGATCAGTGACCCGcaaaacacacacatcacacacaggAGACGGTGCTCAACTCGGTCGGGTATCCAGGAGCAGATACAGGACTGTATAAAACCCACACACCATCAACATGAACATCATGAACTCTGGGTCTGAAGCAATAACACACACATGGGAGCATCGGTCACTGCATCATGTACTGCGTGTCTCAGCTGAACTTGTAGAAATCTGCAATTGATTGTGGACCTTTTAAAAGATGTGGAAAAGAGGGAAACGTCTTTCTCTTCTTCTGGAGGACTCGAATCAACCTCCAATCTGCTAGGAGACGTcatttcacttcacaacagatatgtttttatgttttcctGCGAGAGAATTGACCGCTTTTTCTCgcatcttgtttttgtttgtcagaGCGGTTACTGAACTTGTTCAAAAGCGTGTCAGAccattacagtatttattgaacAGACTTGAACTATACACGTGTGTTTCTGCTCGAACAAGGACCAATGTAGAGTTTGGTGGAGCGACTGGTTTTAAAATCAGTTCCCATTTTAGCAATAATCACATGGACAAATTGTAAAGACAATTAGAAGTTGAGTTTAAAGAAAGAAGTGGAATGGACAACTGTTACTTACTTGAGGTAGAGAGAATCAGAGTGATGATTGTTATTATCCTCCCTAatgtttttagttattatttctgtttttaaaccCTGTGTATTTATGATTGACCGGTGAGAGGAGCAAGTTTGTGTCGCTGAGGTGTTGGGGAACTTGAGTTTTACTGGAATCAAACTTGAATTGTTCACAGTTACTGTTAAGCCCAAAGTTACTTCAGTTTTTACTATTACACAAGGATCTATAGCAGTAAATGGGGGTGAGTTTTATCATCGGAGCAGTATCTGCGTACTGTACATGCACTGCCCAATTTTAATGTTTATGCGCAATTTATGCACATGCTTTGAATTGATATTCATGCTTTGAACTTGTTTTGCACTAGTTTGTTTGCAGTGTTcattttgtcaacaaaaaagggtgaaaatgtttatttaaaatattttttttccaaagtttTCACTCGCGCTTATTTAACGGctcatgagtaggcccacacggaatctagCCCACCATGTctaatatgaacattttcatataagtcaataatattaatttcagtaatattattgactaatataaaatgttcatctaatttatgtacaatgcagtttgtaaagttatattttctgtcttttagtaggtatattatatgagagacttgctttgtttaccaaataaagtgaatctaattggatttgaattttaaacaataattaaaagtttcaaaattattatttttgtttcatatattaagttataATACTCCCCAAATAGTTCCACagtaatctgcagatttttaccaaaatagcaaaacacatccgcagattccgtctggccctctCCTTGAGTCATGACTAAACAAAGGGCGCCAACGTGAGCGCGCATACTGACGGAGTTTTTCAtcactttattttcattcatgGCTTTTAACCCTTTCCCGCAAGCTTTTGACCGTGTGTTTTTGTGCTGCTGTGGTCGAGGTCAAACACAAGTGGAAGAAGGTATGCGATAAATAAGGAAAAAGGCATGATGGTGATGACTTTTTTTGTGCAACAAGTGAGTGTCAGAGGCGTGAAGTTGCTCAGCGCCATCTTGTGTACAAGAGTATTTAGGTGATTTATTAAGCGGCATACAATGTCAGGGCAATTCGTCTCATCTCTAAGGAAAGTTGTTTGGttataaatagcaaaaaatgtctcaaaaaattacaaaaagtgCGACGAAAGTTATGCCGGTGCGCACAGGTCTTAAAAATAGACGAAGATGAGAAGGAACGGATATTAGAAACTATATCAGCATGTAATacttttattagaaatgaaatttCTAACATCATTTACTCCATCAACTTATTTCAAAccaatttgagtttttttttttcgttgaacacaaaagaagatattttgaagaatgttagaaacttgaCATCAGAAGTAAGAACATCAAAAAGTATGGGTGTGAATAATCGCATAGTTTTTAGTCACAAAATTGGCACAGCAAACCTGTAAAGTTTATTTCAAGCCAGTCTATGAATGTTTTTCGTCTGTATTTTTGTTGACGAAATTAAAACTGTCCACAAACTGTCAAAACTAAACAGTCGGTGGAAAAAAGAAGCTTAAAGATAACACATGCGGCTGATGAGTGAATGGTTTTCAACaggtataaatataatttttaaacactGGACGAGGATGAATCTTTCTAGTGCGCATGTGTCGGTCACTATTAAGTGAAGTGCACTTTGAAAAGCTGTGCATGTCATAAATGAAGTAAACTTTGGGCTGAACGTTTGTGAGAACTCAGTCCTTCCTGAAGCTGGACGTTTAAGGACCAAGCAGAACTCAAGGATTGACATCAACATTTCACTGAACACTGGGTCATTCTCAGAACACTGAACCCGTCCGCTTGTTTCAGCTCCTGATCAAAAGAATTTTTTTCCATTGTCAATTTTATGACAATTTGAATTCATTTTATTcaaatcattaatatttaaatgaaaagtaCAAGTGTATGAATATATTATTACTCCTCAATAATGGGAAGAGTGAATGCAAAAAGAGCTAAATATTTgttctgttcatttttttataatgacAGGCTTTTGTGAGATTTACCCAGAGGAttggagtttttgtttgtttgtcttttacgtttcattatttcatttgaaGAGTCTGTTACTGATGTCCCCTGTCCGACCATTTCATTTTTCATCTGTATATTTGTCGTCTTGCTGTCCTTCTCAGTGATCTCTCCCTCCTCTTGagcatttgtctgtctgtctatctgtgggCGCTGCTGTGCAAAGCCCTTGCTGAGTGATGAAAGTGTGTGCTATTTATTCTGGTCAGGGAGGGAGAGAATGAAGGTGGGATGTATTGTATAGACACGATTGTAAAGATGACTTGTGAGTcacaaatgtataataaaaaaagctaaaaaaaa
>TCONS_00021413
TCTTGCAGTACAGCCAGTAACTCTCCACGCAGCACACCCGGCAGCTCGCCCTCCTTACGCCGGCGTGTGTTGGGAGGCAGAGCCAGTGAAGGAGAGACGGCGGGAGAAAAAAGCGGTGGCGGTTCAGACAGCCCTCTGCCTCCCACTCCATCCTCATCCACCTCCTCCTACCCCCTCGCTGCACGTCACTTCACCCGCAATGCCAAGGTTCTCAGCCCTACATACAAACAGAGGAACGAAGACTTCCGTAAACTCTTTAAAAAGCTGCCCGATACAGAGCGTCTCATAGTGGATTACTCATGTGCACTTCAGAAGGACATTCTACTCCAGGGTCGTCTCTACCTGTCAGAGAACTGGCTCTGCTTTTATAGTAATATCTTCCGATGGGAGACTACGATAACCATACTTCTGAAAGACGTGACCAATCTGACCAAGGAGAAGACGGCCAAGCTCATCCCGAACGCCATCCAGATCAGCACTGAAAACGAGAAGCACTTCTTCACGTCATTTGGGGCAAGGGATCGCAGCTACATGATGATCTTCAGACTATGGCAGAACGCACTAATGGATAAGGTGAGTGACAGTGCACGAATGACAAAGCCATCTGAGGTCTCCTGTAAGAATCAGCGCTGTGTGTTTGTCACTGTGTAG
>TCONS_00021414
CTGATTTAACGAGCATATTTTCATAAAACTAACTATGAAATCCTCATTTAGTCCAGCGATTGTGAGTTTAGAACGGCGAAGAGGCGAAATCACGGATGAGAAAAAGTAAACAGAGGACCGTTTTCTCTCCCACCGGTATCTTTAGCATTCTGCTAGCAGCCAACTAGCGTCTAGGATCCGATCCAACTGTCTGAATAGTACAGCTGACCGGTTCGTTAGCACCGCTAACCCCTATCATGGTTTGTTTACTTAAGTTTGATTTGTCATTTACGCATTTTCCTGCGTATATAATGTCGACTCGACGTTAAAATTAAATTCGTCTTTAGAAAAAAGTGACTAAATTTGAAAACTGGCGACGAAAGATACTTTTTTTGTTAGCTTGCCGGCTAAAGTAGGGGTGCTGATGTGTTCCTACGAGAAAGTGGATTTTAACATCACCCCTCGTACTGTCGCCCGCCTGGTTTATGAGGCCgaacaagaaaaaaacaatgggGGAAATTCGTCTAATGGAAGTACAGCCAGTAACTCTCCACGCAGCACACCCGGCAGCTCGCCCTCCTTACGCCGGCGTGTGTTGGGAGGCAGAGCCAGTGAAGGAGA

Function

symbol description
gramd1a Predicted to act upstream of or within lipid transport. Predicted to be located in endoplasmic reticulum membrane and plasma membrane. Predicted to be integral component of membrane. Orthologous to human GRAMD1A (GRAM domain containing 1A).

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-688 Predicted to act upstream of or within lipid transport. Predicted to be located in endoplasmic reticulum membrane and plasma membrane. Predicted to be integral component of membrane. Orthologous to human GRAMD1A (GRAM domain containing 1A).

Ensembl:

ensembl_id ENSDARG00000076689

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00021412 False 6298 mRNA 0.44 20 41902949 41944765
TCONS_00021413 False 651 mRNA 0.52 5 41929606 41936932
TCONS_00021414 True 600 processed_transcript 0.45 2 41936838 41961194

Neighbor

gene id symbol gene type direction distance location
XLOC_010951 CR318611.1 coding downstream 20389 41882445 ~ 41882560 (-)
XLOC_010950 zgc:194418 coding downstream 35116 41867176 ~ 41867833 (-)
XLOC_010949 si:dkey-199f5.3 coding downstream 47941 41853715 ~ 41855008 (-)
XLOC_010948 si:dkey-199f5.4 coding downstream 62281 41840011 ~ 41840668 (-)
XLOC_010947 si:dkey-199f5.7 coding downstream 95552 41806740 ~ 41807397 (-)
XLOC_010955 pycard coding upstream 22838 41984032 ~ 41990421 (-)
XLOC_010956 caspa coding upstream 32357 41993551 ~ 42004544 (-)
XLOC_010957 etv2 coding upstream 45896 42007090 ~ 42014272 (-)
XLOC_010958 zp3d.2 coding upstream 87168 42048362 ~ 42056137 (-)
XLOC_010959 zp3d.1 coding upstream 96724 42057918 ~ 42066617 (-)
XLOC_010626 CR392024.2 misc downstream 21007774 20895112 ~ 20895175 (-)
XLOC_010944 NA non-coding downstream 164951 41684868 ~ 41737998 (-)
XLOC_010942 BX005012.3 non-coding downstream 360086 41542079 ~ 41542863 (-)
XLOC_010940 NA non-coding downstream 373936 41523038 ~ 41529013 (-)
XLOC_010934 NA non-coding downstream 794237 41103491 ~ 41108712 (-)
XLOC_010970 CR854827.1 non-coding upstream 912546 42873740 ~ 42874709 (-)
XLOC_010975 NA non-coding upstream 1011891 42973085 ~ 42974540 (-)
XLOC_010976 NA non-coding upstream 1013353 42974547 ~ 42993892 (-)
XLOC_010981 NA non-coding upstream 1157919 43119113 ~ 43124227 (-)
XLOC_010987 NA non-coding upstream 1397731 43358925 ~ 43368871 (-)

Expression


Co-expression Network