G306252


Basic Information

Item Value
gene id G306252
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000092
NCBI id null
chromosome length 5370156
location 4396447 ~ 4396893 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU347978
AAAGACATTACAATAATGTTGTTATGAGAACGTTTTTTTTTTTTCAACATTATGAGAACATCAGTCAAGTACAAATAACATCATAAAGACATTACGAGAAAGTTGTTATAAGAACGTTTTCTCTCAACATCATGAGAACATCAGTCAAGTACAAATAACATCATAAAGATGTTACAAGAACGTTGTAATGAGAACGTTTTCTCTCAACACCATGAGAACATCAGTCAAGTAAAAATAACATCATAAAGATGTTCCAAGAACGTTGTTATGAGAACGTTTTCTCAACATTATGAGAACATCAGTCAAGTACAAATAACATCATAAAGACGTTACAAGAACGTTGTTATGAGAACGTTTTCACTCAAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU347978 True 366 lncRNA 0.31 2 4396447 4396893

Neighbor

gene id symbol gene type direction distance location
CI01000092_04392184_04393522 NA coding upstream 2505 4391834 ~ 4393942 (+)
CI01000092_04355642_04374319 NA coding upstream 22125 4354865 ~ 4374322 (+)
CI01000092_04335830_04347365 MED17 coding upstream 48893 4335830 ~ 4347554 (+)
CI01000092_04284298_04291859 NA coding upstream 104588 4284298 ~ 4291859 (+)
CI01000092_04218446_04223477 NA coding upstream 171783 4218446 ~ 4224664 (+)
CI01000092_04458178_04481575 NA coding downstream 61285 4458178 ~ 4481575 (+)
CI01000092_04496416_04505871 NA coding downstream 99523 4496416 ~ 4505910 (+)
CI01000092_04517186_04519261 NA coding downstream 120293 4517186 ~ 4519585 (+)
CI01000092_04529365_04534495 NA coding downstream 132472 4529365 ~ 4534497 (+)
CI01000092_04551146_04603991 CUX1B, SH2B2 coding downstream 154253 4551146 ~ 4606126 (+)
G306241 NA non-coding upstream 24314 4371579 ~ 4372133 (+)
G306205 NA non-coding upstream 82843 4306789 ~ 4313604 (+)
G306217 NA non-coding upstream 92309 4303787 ~ 4304138 (+)
G306200 NA non-coding upstream 184397 4211608 ~ 4212050 (+)
G306173 NA non-coding upstream 235013 4161047 ~ 4161434 (+)
G306317 NA non-coding downstream 106151 4503044 ~ 4550487 (+)
G306342 NA non-coding downstream 176563 4573456 ~ 4578385 (+)
G306275 NA non-coding downstream 205827 4602720 ~ 4603311 (+)
G306290 NA non-coding downstream 210684 4607577 ~ 4609397 (+)
G305596 NA other upstream 535114 3726347 ~ 3863135 (+)
G305584 NA other upstream 728482 3667308 ~ 3667965 (+)
G304938 NA other upstream 2078213 2317792 ~ 2318234 (+)
G303768 NA other upstream 3079924 1315443 ~ 1316523 (+)

Expression


Co-expression Network