G306317


Basic Information

Item Value
gene id G306317
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000092
NCBI id null
chromosome length 5370156
location 4503044 ~ 4550487 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU348059
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTAGTCATAAGCCATCTTTAATATCATTCACAGCCTCACTTGCCTCTAGCAAATCAAAATACAACTCAGCTGAATAAAAAGTAAAATCTCGACCTGACCCGGTTCTAGAAGAGCCCTGGAGTGAAAACTGAAAACACTAGGACAAGGAAAAGCATATATCATGCATTATACATTGGTTCTGCTCGAACACAATGTGCTGTATCTGTTTGGACATGATGCACACCGCTGGACAAAACACAGATATGACAAAAAGTCTGCTCCACACCACAAGTTCATGATGGCAGTAAGCGAGTTTGAGATCTTCAGAGTTTGGACAGGCTCTTCTCCAGAGCGTCGATGTCAGCATCTCCATCTTCAGCTTTGCTTCCTCGGGCACTGCACTCGATGAACTCCACGCGAGCGGGCAGCTGGGAGAACTCGAAGTCTTTGCCTCTCTTACCCAGATACACCGAGCCCCCGACGGGCCCGTCCTGAGAGGAGAGCGCCGCAGATCGCGTCAATCTCAGAGTGTTCCTGTGGAGAACAGACAATCAGGACATAAA
>TU348057
AAATGTCATTGCTGGCTATGGAGGCCTCACTGAGCCATCGGATTTCAACAAAAATATCTTAATTTGTGTTCCGAAGATTACTGTGTACGCGTACGAGTCAAAAGAAGTATACTTTCCATGGCTGTGTACACGCACATTAGCGTACACGTAAAAAAACAAAGGCTTTACTAGAGCCTCATCAGTAGGGAACGAATATGGGAACTGTTTAGCCACTTATTAAATTGAAGCCTTTGGAGAAGCAGCATGAAAACAAGTAGTCATAAGCCATCTTTAATATCATTCACAGCCTCACTTGCCTCTAGCAAATCAAAATACAACTCAGCTGAATAAAAAGTAAAATCTCGACCTGACCCGGTTCTAGAAGAGCCCTGGAGTGAAAACTGAAAACACTAGGACAAGGAAAAGCATATATCATGCATTATACATTGGTTCTGCTCGAACACAATGTGCTGTATCTGTTTGGACATGATGCACACCGCTGGACAAAACACAGATATGACAAAAAGTCTGCTCCACACCACAAGTTCATGATGGCAGTAAGCGAGTTTGAGATCTTCAGAGTTTGGACAGGCTCTTCTCCAGAGCGTCGATGTCAGCATCTCCATCTTCAGCTTTGCTTCCTCGGGCACTGCACTCGATGAACTCCACGCGAGCGGGCAGCTGGGAGAACTCGAAGTCTTTGCCTCTCTTACCCAGATACACCGAGCCCCCGACGGGCCCGTCCTGAGAGGAGAGCGCCGCAGATCGCGTCAATCTCAGAGTGTTCAACTCCTTCTCCAACTGCTGCTGAATTAATTTGGCTGATTTTGCCATATAGATATCTTGTTTGTTGCAGGCGACCACGAGTGCTGGGGCGTTTTTAGCCACGATGCTGTCTGTGAGGATGGAGTAGAGAAACTCGGCCACATCTCTGACGTCCTTCTGGAAGACGCTGCTGTCCACCACAAACACTATGGCTCGAGCCACGGCCTTGTACTTCTCCACAATCTGAACTCTTAAACTTTCATGACCAGGAACATCAATTAGAGTCCAACTGCTGCCTCGGTCACTCTTGCTCTTGTATGTGGCACTGCTCTCCGTGATGGACATCTGAGTTCTGACAAACTTCCCTAGTAACAATCGAGTGAACAGGAGAGTTTTCCCGGAGTCACACAGTCCCAGCAGCAGCACGGCATTCCTCGCCTTACTGGAGCCCCAAAAATTCCCAAAGAAAACGACAGTGAGAATCACGAGCAATAAAGCCACAAATATCCCGATGAGGAAAACGGCCTCTTCCTTCTGTATCTCCTTAATGAAACTCTCCAGAAACGGCTCCGTGGAGAAATCCTCTAAATCTAAATGAACCTTCTCGTCCATGTCTGTCTGCACATGGGAAGCGAACACAAGACAGCGGAAGTGAATGACA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU348059 False 571 lncRNA 0.46 2 4503044 4545761
TU348057 True 1405 lncRNA 0.47 7 4544967 4550487

Neighbor

gene id symbol gene type direction distance location
CI01000092_04458178_04481575 NA coding upstream 21469 4458178 ~ 4481575 (+)
CI01000092_04392184_04393522 NA coding upstream 109102 4391834 ~ 4393942 (+)
CI01000092_04355642_04374319 NA coding upstream 128722 4354865 ~ 4374322 (+)
CI01000092_04335830_04347365 MED17 coding upstream 155490 4335830 ~ 4347554 (+)
CI01000092_04284298_04291859 NA coding upstream 211185 4284298 ~ 4291859 (+)
CI01000092_04551146_04603991 CUX1B, SH2B2 coding downstream 659 4551146 ~ 4606126 (+)
CI01000092_04614031_04615179 SNAPC3 coding downstream 63173 4613660 ~ 4615298 (+)
CI01000092_04619174_04622538 NA coding downstream 68552 4619039 ~ 4622856 (+)
CI01000092_04648022_04657635 NA coding downstream 97535 4648022 ~ 4657666 (+)
CI01000092_04674418_04684486 RABGEF1L coding downstream 123891 4674378 ~ 4684854 (+)
G306238 NA non-coding upstream 77616 4388824 ~ 4425428 (+)
G306252 NA non-coding upstream 106151 4396447 ~ 4396893 (+)
G306241 NA non-coding upstream 130911 4371579 ~ 4372133 (+)
G306205 NA non-coding upstream 189440 4306789 ~ 4313604 (+)
G306217 NA non-coding upstream 198906 4303787 ~ 4304138 (+)
G306342 NA non-coding downstream 22969 4573456 ~ 4578385 (+)
G306275 NA non-coding downstream 52233 4602720 ~ 4603311 (+)
G306290 NA non-coding downstream 57090 4607577 ~ 4609397 (+)
G306279 NA non-coding downstream 60963 4611450 ~ 4613064 (+)
G305596 NA other upstream 641711 3726347 ~ 3863135 (+)
G305584 NA other upstream 835079 3667308 ~ 3667965 (+)
G304938 NA other upstream 2184810 2317792 ~ 2318234 (+)
G303768 NA other upstream 3186521 1315443 ~ 1316523 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location