G306342


Basic Information

Item Value
gene id G306342
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000092
NCBI id null
chromosome length 5370156
location 4573456 ~ 4578385 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU348087
GCAAACACAACAGGGCAAGGACAAGGCAGAGGTGTAAACAGGGACAGGCAGAGATCAGGGCAGGCAGCAAACGTACAGAATCCAGGAACAGGCAAAGGTCAGGGCAGGCAGCAGAGAATCAAACACACGAGGAACAGTCCAGTCAAACACAAGAAAAGCAATCCACAATAACACTCAGAAAAGATCACCAGGGAAAATCAAGACTTCACATGGAGGTGTGGGTGCAAGTGTCTTTTATGTGTGAGTGAGTGATTGCATAATGGGTAGCAGGTGCAGGGTGATCAGTCCAGGGTATGAGGGTAGATGGGAAATGGAGTCCAAATGATGTGTGTAGTCCAGGATGGAGTGCCCTCTGGTGGCAATGATGGGCACTCTCACTGGTGATCGTGA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU348087 True 390 lncRNA 0.50 2 4573456 4578385

Neighbor

gene id symbol gene type direction distance location
CI01000092_04529365_04534495 NA coding upstream 38959 4529365 ~ 4534497 (+)
CI01000092_04517186_04519261 NA coding upstream 53871 4517186 ~ 4519585 (+)
CI01000092_04496416_04505871 NA coding upstream 67546 4496416 ~ 4505910 (+)
CI01000092_04458178_04481575 NA coding upstream 91881 4458178 ~ 4481575 (+)
CI01000092_04392184_04393522 NA coding upstream 179514 4391834 ~ 4393942 (+)
CI01000092_04614031_04615179 SNAPC3 coding downstream 35275 4613660 ~ 4615298 (+)
CI01000092_04619174_04622538 NA coding downstream 40654 4619039 ~ 4622856 (+)
CI01000092_04648022_04657635 NA coding downstream 69637 4648022 ~ 4657666 (+)
CI01000092_04674418_04684486 RABGEF1L coding downstream 95993 4674378 ~ 4684854 (+)
CI01000092_04707655_04708614 NA coding downstream 129270 4707655 ~ 4709019 (+)
G306317 NA non-coding upstream 22969 4503044 ~ 4550487 (+)
G306238 NA non-coding upstream 148028 4388824 ~ 4425428 (+)
G306252 NA non-coding upstream 176563 4396447 ~ 4396893 (+)
G306241 NA non-coding upstream 201323 4371579 ~ 4372133 (+)
G306205 NA non-coding upstream 259852 4306789 ~ 4313604 (+)
G306275 NA non-coding downstream 24335 4602720 ~ 4603311 (+)
CI01000092_04551146_04603991 CUX1B, SH2B2 non-coding downstream 25071 4551146 ~ 4606126 (+)
G306290 NA non-coding downstream 29192 4607577 ~ 4609397 (+)
G306279 NA non-coding downstream 33065 4611450 ~ 4613064 (+)
G306280 NA non-coding downstream 87469 4665854 ~ 4667452 (+)
G305596 NA other upstream 712123 3726347 ~ 3863135 (+)
G305584 NA other upstream 905491 3667308 ~ 3667965 (+)
G304938 NA other upstream 2255222 2317792 ~ 2318234 (+)
G303768 NA other upstream 3256933 1315443 ~ 1316523 (+)

Expression


Co-expression Network