XLOC_010954 (BX649388.1)



Basic Information


Item Value
gene id XLOC_010954
gene name BX649388.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information


Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 41955855 ~ 41965309 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence


>TCONS_00021416
CACGAGTGGGCTGCACATTAGATTTCCTGCTGGACCCACGAGCTGGTGCACTTTTATATTTAGCAGAGCTCGAGTTTCCAGAAGCCCATTCACTGTCAGCAGACTAACAGAGGCACAACGAATATCTCTCTCTCCAGGCTACAAGACGACTCACGCGTGTGTGTTTATGtccttgtgtgtgtgagacagagagatGGCAAGTGTCGAAACGCCTAAATGCGAATTAAGAGCCGAATGGTGACCTTCTTGGGGAGAAAAGGGCTGGTGAGAAAATAATTTCCAAATGCATCTTGCAATGATTGACAGAATAATGAAAATGATATTTGCTGATACAAGCAATCGAGCAATGTGATCTTATCATACCTGATGTGCGTACCTCGATGACACGACAGATTGCAAAATTGCATTTTTGTCAAAGGAAAAAGGGGCAGAGACATTATAAAGGAAGTCTTTAATAGCGAAAGAGGAAGAAGATTGATTTGACTTCCAGCAGTCTTGAGATCTAGCAAGTTTGAACTTCAGAAATGCTCTGTTCTTCCTTGAAAAATGACCTATTACTGGAAGATATGCCTCCACCCTTTTGTGTATATTAGAAATCTGTGATGGCTCCGCCCCATTTTTGCAAGTTCATACTGCAGgaaattatatc

Function


GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000091933

RNA


RNA id representative length rna type GC content exon number start site end site
TCONS_00021416 True 649 processed_transcript 0.42 3 41955855 41965309
Loading

Neighbor


gene id symbol gene type direction distance location
XLOC_010953 BX649388.3 coding downstream 6739 41948075 ~ 41949116 (-)
XLOC_010951 CR318611.1 coding downstream 73295 41882445 ~ 41882560 (-)
XLOC_010950 zgc:194418 coding downstream 88022 41867176 ~ 41867833 (-)
XLOC_010949 si:dkey-199f5.3 coding downstream 100847 41853715 ~ 41855008 (-)
XLOC_010948 si:dkey-199f5.4 coding downstream 115187 41840011 ~ 41840668 (-)
XLOC_010955 pycard coding upstream 18723 41984032 ~ 41990421 (-)
XLOC_010956 caspa coding upstream 28242 41993551 ~ 42004544 (-)
XLOC_010957 etv2 coding upstream 41781 42007090 ~ 42014272 (-)
XLOC_010958 zp3d.2 coding upstream 83053 42048362 ~ 42056137 (-)
XLOC_010959 zp3d.1 coding upstream 92609 42057918 ~ 42066617 (-)
XLOC_010626 CR392024.2 misc downstream 21060680 20895112 ~ 20895175 (-)
XLOC_010944 NA non-coding downstream 217857 41684868 ~ 41737998 (-)
XLOC_010942 BX005012.3 non-coding downstream 412992 41542079 ~ 41542863 (-)
XLOC_010940 NA non-coding downstream 426842 41523038 ~ 41529013 (-)
XLOC_010970 CR854827.1 non-coding upstream 908431 42873740 ~ 42874709 (-)
XLOC_010975 NA non-coding upstream 1007776 42973085 ~ 42974540 (-)
XLOC_010976 NA non-coding upstream 1009238 42974547 ~ 42993892 (-)
XLOC_010981 NA non-coding upstream 1153804 43119113 ~ 43124227 (-)
XLOC_010987 NA non-coding upstream 1393616 43358925 ~ 43368871 (-)

Expression


Expression of XLOC_010954(BX649388.1) in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 15.
End of interactive chart.

Expression of XLOC_010954(BX649388.1) in the Zebrafish Sample of PRJEB12982

Bar chart with 360 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 15.
End of interactive chart.

Co-expression Network