Gene
RNA
| Item | Value |
|---|---|
| gene id | G306275 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000092 |
| NCBI id | null |
| chromosome length | 5370156 |
| location | 4602720 ~ 4603311 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU348010 | True | 592 | lncRNA | 0.36 | 1 | 4602720 | 4603311 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000092_04529365_04534495 | NA | coding | upstream | 68223 | 4529365 ~ 4534497 (+) |
| CI01000092_04517186_04519261 | NA | coding | upstream | 83135 | 4517186 ~ 4519585 (+) |
| CI01000092_04496416_04505871 | NA | coding | upstream | 96810 | 4496416 ~ 4505910 (+) |
| CI01000092_04458178_04481575 | NA | coding | upstream | 121145 | 4458178 ~ 4481575 (+) |
| CI01000092_04392184_04393522 | NA | coding | upstream | 208778 | 4391834 ~ 4393942 (+) |
| CI01000092_04614031_04615179 | SNAPC3 | coding | downstream | 10349 | 4613660 ~ 4615298 (+) |
| CI01000092_04619174_04622538 | NA | coding | downstream | 15728 | 4619039 ~ 4622856 (+) |
| CI01000092_04648022_04657635 | NA | coding | downstream | 44711 | 4648022 ~ 4657666 (+) |
| CI01000092_04674418_04684486 | RABGEF1L | coding | downstream | 71067 | 4674378 ~ 4684854 (+) |
| CI01000092_04707655_04708614 | NA | coding | downstream | 104344 | 4707655 ~ 4709019 (+) |
| G306342 | NA | non-coding | upstream | 24335 | 4573456 ~ 4578385 (+) |
| G306317 | NA | non-coding | upstream | 52233 | 4503044 ~ 4550487 (+) |
| G306238 | NA | non-coding | upstream | 177292 | 4388824 ~ 4425428 (+) |
| G306252 | NA | non-coding | upstream | 205827 | 4396447 ~ 4396893 (+) |
| G306241 | NA | non-coding | upstream | 230587 | 4371579 ~ 4372133 (+) |
| CI01000092_04551146_04603991 | CUX1B, SH2B2 | non-coding | downstream | 145 | 4551146 ~ 4606126 (+) |
| G306290 | NA | non-coding | downstream | 4266 | 4607577 ~ 4609397 (+) |
| G306279 | NA | non-coding | downstream | 8139 | 4611450 ~ 4613064 (+) |
| G306280 | NA | non-coding | downstream | 62543 | 4665854 ~ 4667452 (+) |
| G306363 | NA | non-coding | downstream | 68764 | 4672075 ~ 4672593 (+) |
| G305596 | NA | other | upstream | 741387 | 3726347 ~ 3863135 (+) |
| G305584 | NA | other | upstream | 934755 | 3667308 ~ 3667965 (+) |
| G304938 | NA | other | upstream | 2284486 | 2317792 ~ 2318234 (+) |
| G303768 | NA | other | upstream | 3286197 | 1315443 ~ 1316523 (+) |
