XLOC_010962 (fbl)


Basic Information

Item Value
gene id XLOC_010962
gene name fbl
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 42177659 ~ 42186093 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00021428
GCACATGTGGCCACCTGATCAGTGCAGCAGTAGACCGGAGGAAAAGCGGGTCTGAGTTAACGCCAGCTATTCGTACAGTTAAAACAACCgcacaaaataagataaaatgaGACCAGGATTCAGCCCAAGGGGAGGTGGTGGTCGTGGAGGATTTGGTGGAAGGGGACGAGGCGGAGGAGACCGCGGAGGAAGAGGAGGATTTCGAGGAGGCAGGGGTGGTTTTGGTGGAGGATTCAAGTCTCCGGGAGGTGAAGGTGGCTTTCGTGGACGAGGCGGAGGCCGTGGCACTCCTAGAGGACGGGGAGGAGGAAGAGGGGGAGGACGAGGAGGCTTTAGAGGAGGAGCCAAGGTGACCGTAGAACCCCATAGACATGAAGGAGTTTTTATCTGCCGTGGTAAGGAGGATGCTCTGGTCACAAAGAACATGGTGATTGGAGAGTCTGTGTACGGAGAGAAGAGGATAAATGTCGAGgaaggAGAAACTAAGATTGAGTACAGAGCGTGGAATCCTTTCAGGTCAAAGTTGGCCGCTGCCATTTTAGGAGGTATTGACCAGATCCACATCAAGCCAGGAGTAAAGGTCATGTACCTGGGAGCCGCTTCAGGAACTACTGTATCCCATGTTTCTGACATTGTTGGACCGGAAGGGTTGGTGTATGCTGTTGAGTTCTCACACAGATCGGGCAGAGACTTGCTTAATGTAGCGAAAAAAAGAACCAATATTATTCCCATCATTGAAGATGCCCGACACCCGCACAAGTACCGCATGCTTGTCGGAATGGTGGACGTCATCTTTGCTGATGTTGCTCAGCCTGACCAAACCAGAATTGTTGCCCTCAACGCACACAATTTTCTAAAGAACGGAGGCCATTTTGTTATTTCAATCAAGGCGAACTGTATTGACTCCACAGCAGCTCCAGAAGCAGTGTTTGCGTCCGAGGTGAAGAAGATGAGCGCTGAGAATATGAAGCCTCAGGAGCAGCTCACACTGGAGCCATACGAGAGAGATCACGCTGTCGTTGTCGGAATCTACAGACCACCACCCAAGGGGAAGAAATAAGGATTTATTGTGAAAACTTTCATCTCTTGTTCGCATCCTTCTTCGCTCCTGAAATTCTTGCTTCAGCCACTAGATGGACCCACAGTTTGCAGATGACAAAAGACTGATATAACTGAACCATTTTCCTGCATCCATTGGGACGGGAGTGCATCCCGCTGCAATATATTCTTTATGGAGAGTAACACAGCTCCcgggtttttctgttttgttttttctttgtatGATTATCCTCTGTGTAATATACAGTACCGAGAGATGAATTTTGAGTTTTGCTTGTCAGAATTATTGGAATCTCGATTAACTAGATCAACAGTTTTCAGAAGCATACCTTTGTTattgtttctttaaatatttttagtaaaacATTTTTATCTGA
>TCONS_00021429
AGTAGACCGGAGGAAAAGCGGGTCTGAGTTAACGCCAGCTATTCGTACAGTTAAAACAACCgcacaaaataagataaaatgaGACCAGACCACCACCCAAGGGGAAGAAATAAGGATTTATTGTGAAAACTTTCATCTCTTGTTCGCATCCTTCTTCGCTCCTGAAATTCTTGCTTCAGCCACTAGATGGACCCACAGTTTGCAGATGACAAAAGACTGATATAACTGAACCATTTTCCTGCATCCATTGGGACGGGAGTGCATCCCGCTGCAATATATTCTTTATGGAGAGTAACACAGCTCCcgggtttttctgttttgttttttctttgtatGATTATCCTCTGTGTAATATACAGTACCGAGAGATGAATTTTGAGTTTTGCTTGTCAGAATTATTGGAATCTCGATTAACTAGATCAACAGTTTTCAGAAGCATACCTTTGTTattgtttc

Function

symbol description
fbl Predicted to enable RNA binding activity; histone-glutamine methyltransferase activity; and rRNA methyltransferase activity. Acts upstream of or within neurogenesis. Located in nucleolus. Is expressed in several structures, including alar plate midbrain region; digestive system; immature eye; musculature system; and nervous system. Orthologous to several human genes including FBL (fibrillarin).

GO:

id name namespace
GO:0006364 rRNA processing biological_process
GO:0000494 box C/D snoRNA 3'-end processing biological_process
GO:1990258 histone glutamine methylation biological_process
GO:0031167 rRNA methylation biological_process
GO:0022008 neurogenesis biological_process
GO:0032040 small-subunit processome cellular_component
GO:0015030 Cajal body cellular_component
GO:0031428 box C/D snoRNP complex cellular_component
GO:0005730 nucleolus cellular_component
GO:0008168 methyltransferase activity molecular_function
GO:0003723 RNA binding molecular_function
GO:1990259 histone-glutamine methyltransferase activity molecular_function
GO:0008649 rRNA methyltransferase activity molecular_function

KEGG:

id description
ko03008 Ribosome biogenesis in eukaryotes
ko03009 Ribosome biogenesis

ZFIN:

id description
ZDB-GENE-040426-1936 Predicted to enable RNA binding activity; histone-glutamine methyltransferase activity; and rRNA methyltransferase activity. Acts upstream of or within neurogenesis. Located in nucleolus. Is expressed in several structures, including alar plate midbrain region; digestive system; immature eye; musculature system; and nervous system. Orthologous to several human genes including FBL (fibrillarin).

Ensembl:

ensembl_id ENSDARG00000053912

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00021428 False 1436 mRNA 0.47 9 42177659 42186093
TCONS_00021429 True 456 processed_transcript 0.40 2 42177692 42186065

Neighbor

gene id symbol gene type direction distance location
XLOC_010961 alkbh8 coding downstream 2042 42156064 ~ 42175617 (-)
XLOC_010960 dyrk1b coding downstream 25514 42071696 ~ 42152145 (-)
XLOC_010959 zp3d.1 coding downstream 111042 42057918 ~ 42066617 (-)
XLOC_010958 zp3d.2 coding downstream 121522 42048362 ~ 42056137 (-)
XLOC_010957 etv2 coding downstream 163387 42007090 ~ 42014272 (-)
XLOC_010963 zgc:162160 coding upstream 7070 42193163 ~ 42238120 (-)
XLOC_010964 ppox coding upstream 102983 42289076 ~ 42306597 (-)
XLOC_010965 cspg5a coding upstream 133345 42319438 ~ 42390640 (-)
XLOC_010966 smarcc1a coding upstream 237437 42423530 ~ 42461263 (-)
XLOC_010967 tbx20 coding upstream 322918 42509011 ~ 42523744 (-)
XLOC_010626 CR392024.2 misc downstream 21282484 20895112 ~ 20895175 (-)
XLOC_010954 BX649388.1 non-coding downstream 212350 41955855 ~ 41965309 (-)
XLOC_010953 BX649388.3 non-coding downstream 228543 41948075 ~ 41949116 (-)
XLOC_010951 CR318611.1 non-coding downstream 295099 41882445 ~ 41882560 (-)
XLOC_010944 NA non-coding downstream 439661 41684868 ~ 41737998 (-)
XLOC_010942 BX005012.3 non-coding downstream 634796 41542079 ~ 41542863 (-)
XLOC_010970 CR854827.1 non-coding upstream 687647 42873740 ~ 42874709 (-)
XLOC_010975 NA non-coding upstream 786992 42973085 ~ 42974540 (-)
XLOC_010976 NA non-coding upstream 788454 42974547 ~ 42993892 (-)
XLOC_010981 NA non-coding upstream 933020 43119113 ~ 43124227 (-)
XLOC_010987 NA non-coding upstream 1172832 43358925 ~ 43368871 (-)

Expression


Co-expression Network