XLOC_010971 (hjv)


Basic Information

Item Value
gene id XLOC_010971
gene name hjv
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 42883799 ~ 42894628 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00021445
AGCTGGCGCGCGCGTGTGGCAGGTGCGCACCGCGGGTGATTTACGCGTCTTCTCCTTCAGTGCGGGACGGTGACGCGGATCACACCGCACACGAGCGCGTCACTGTCAGAAGTGACGGGGAAAGATCTCAGCGGCGGTCTACAGGAGACAGTCCTCTGATTCTGGTGTTCAACACGATCAGGACATTATCAGTCTCTTGATGACTCTCAGTAACTCTTAAGTGTTCTTCAGTGGTCCGAGCTTCAGCAGCTGTGTGGACACCTGTGAGCAGGCCGTCCTGCCTGTGTCTGTATGGATGGGAATGGCAGCATCAGCTGGTGGTGGGAATCACTCACACACAACATGGAGACACATTGTGATCATTGTTTTAATGGTCCTGCTCTTTAGTGCTCCATCAGTATGTGCGCAGTGTCGAATCTTGCGATGCAACTCAGACTTCGTGGCTGCGACTTTGGAGAGCGGTGTCATTGGAGGAGGCAATAAAGAGGGTGTAAATACGGGATACTGCAGCGCCCTGCGATCCTACGCCCTCTGCACCCAGCGGACGGCCCGAGCCTGCAGGGGAGACCTTGCGTATCACTCTGCTGTACAGGGCATCGAGGACCTGCTCATACAATACCGCTGCCCAAAAGCAGGCCCCACGGCTCAGCCTCAGCCTCGGCCCCTGCCCCAAGCCCCTCTCTCCGGGGATGGATGCTTCTACGAGAAGGGTTTTATACAGAGGGAGGGCCGGGCCCCAGAATATCTACACTGTGGGGTGTTTGGAGACCCGCATATCCGTACCTTCAACGAGGAGTTCCAGACGTGTGCAGTGCAGGGCGCCTGGCCTCTCATAGATAACCAGTATCTGTACATCCAGGCCACCAGCAGTCCCACCAGGGAGAGCTCTGACACCACCATACTCACAGAGGTCACGGTGATCTTCCAGAACTGGCGTGAGTGCGCTGAACAGCAGGTTTATCAAGCAAAACTGGGCAACGTTCCTCCAGCGTTTGCGGACGGCTCTGTGACTGGCGGGGACCGCAGAGGGCATCAGAGTCTGCGTATTCACTCACAAGACCCAGGCCGGCATGCTGAAATCTGGGCTACTCATATTGGGACCATGATAATAGTGCGGCAGGTTGGCCAGTCGCTGAGCCTGTCCGTCCGCTCTCCTCGTGCCATCGTGGAGTCCTATACGCCGGAACAGGACCTGCagttgtgtgtgtgggggtgtccCATTTCACAACGTTTAGAGATGCTGCATGCACATCCATTCGACCCCGCATACACACACTGTTCCTCGCTGTTTCCGGGGAGAGATGTGTATTTCCAGGCCTGCCTGTTTGATGTGCAGGTGACCGGGGATGTGAACTCCAGCGCTTCAGCTGTGGCTGCGTTAGAGGACGCTCGAGCCATGATTTCTGACCCCGCGAGTGTTCATTTGGTGACTGGTGGGACGGGTAATAACTCCCCGTCATTGCTGGTGGTTCTAGGTTTCAGTTTCCTTACAGAGACCCTCAGACACAGTTTTTTGGGGTCAGCGTGACATCGTGAACACTACACTAAAGCAATATTTAAGGATATTTATACTGGTGTTCATTGTTTACATCTCAGTGGTTTTGGATGGTGGTGTTTTGTAAAGGCTGTCTGGAACGGCCTTTATGTGATGATtttgtgtgcgcgcgtgtgtgtttcAGTGCTCTTGAAGTGTGTATGTACTACACATTTTTGGGAACACTTtttttaactaatgttaatatTTTCTCAAAGAATGATGAAATTTGTTCAGGAGTgtatttataataaagaaaaaaaatacaaacaaaaaa
>TCONS_00021446
GGAAAGATCTCAGCGGCGGTCTACAGGAGACAGTCCTCTGATTCTGGTGTTCAACACGATCAGGACATTATCAGTCTCTTGATGACTCTCAGTAACTCTTAAGTGTTCTTCAGTGGTCCGAGCTTCAGCAGCTGTGTGGACACCTGTGAGCAGGCCGTCCTGCCTGTGTCTGTATGGATGGGAATGGCAGCATCAGCTGGTGGTGGGAATCACTCACACACAACATGGAGACACATTGTGATCATTGTTTTAATGGTCCTGCTCTTTAGTGCTCCATCAGgtacaccttactagtacagagttggaccccctttttgcatttggagctgccttaatcctctgtggcatagattcaacaagTATGTGCGCAGTGTCGAATCTTGCGATGCAACTCAGACTTCGTGGCTGCGACTTTGGAGAGCGGTGTCATTGGAGGAGGCAATAAAGAGGGTGTAAATACGGGATACTGCAGCGCCCTGCGATCCTACGCCCTCTGCACCCAGCGGACGGCCCGAGCCTG

Function

symbol description
hjv Predicted to enable coreceptor activity. Acts upstream of or within notochord development and somite development. Predicted to be anchored component of plasma membrane. Predicted to be part of HFE-transferrin receptor complex. Predicted to be active in plasma membrane. Is expressed in axial chorda mesoderm; liver; muscle; notochord; and somite. Human ortholog(s) of this gene implicated in hemochromatosis and hemochromatosis type 2A. Orthologous to human HJV (hemojuvelin BMP co-receptor).

GO:

id name namespace
GO:0030509 BMP signaling pathway biological_process
GO:0055072 iron ion homeostasis biological_process
GO:0061053 somite development biological_process
GO:0030903 notochord development biological_process
GO:1990712 HFE-transferrin receptor complex cellular_component
GO:0005886 plasma membrane cellular_component
GO:0046658 anchored component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0036122 BMP binding molecular_function
GO:0015026 coreceptor activity molecular_function

KEGG:

id description
ko04350 TGF-beta signaling pathway

ZFIN:

id description
ZDB-GENE-030131-651 Predicted to enable coreceptor activity. Acts upstream of or within notochord development and somite development. Predicted to be anchored component of plasma membrane. Predicted to be part of HFE-transferrin receptor complex. Predicted to be active in plasma membrane. Is expressed in axial chorda mesoderm; liver; muscle; notochord; and somite. Human ortholog(s) of this gene implicated in hemochromatosis and hemochromatosis type 2A. Orthologous to human HJV (hemojuvelin BMP co-receptor).

Ensembl:

ensembl_id ENSDARG00000030494

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00021445 False 1811 mRNA 0.53 5 42883799 42894628
TCONS_00021446 True 520 nonsense_mediated_decay 0.52 5 42888197 42894510

Neighbor

gene id symbol gene type direction distance location
XLOC_010970 CR854827.1 coding downstream 9090 42873740 ~ 42874709 (-)
XLOC_010969 txnipb coding downstream 11227 42869054 ~ 42872572 (-)
XLOC_010968 slc4a7 coding downstream 113735 42693247 ~ 42770064 (-)
XLOC_010967 tbx20 coding downstream 360055 42509011 ~ 42523744 (-)
XLOC_010966 smarcc1a coding downstream 422536 42423530 ~ 42461263 (-)
XLOC_010972 thbs3a coding upstream 5610 42900238 ~ 42933332 (-)
XLOC_010973 mtx1a coding upstream 44231 42938859 ~ 42965192 (-)
XLOC_010974 si:ch211-135n15.3 coding upstream 73469 42968097 ~ 42969598 (-)
XLOC_010975 NA coding upstream 78457 42973085 ~ 42974540 (-)
XLOC_010976 NA coding upstream 79919 42974547 ~ 42993892 (-)
XLOC_010626 CR392024.2 misc downstream 21988624 20895112 ~ 20895175 (-)
XLOC_010954 BX649388.1 non-coding downstream 918490 41955855 ~ 41965309 (-)
XLOC_010953 BX649388.3 non-coding downstream 934683 41948075 ~ 41949116 (-)
XLOC_010951 CR318611.1 non-coding downstream 1001239 41882445 ~ 41882560 (-)
XLOC_010944 NA non-coding downstream 1145801 41684868 ~ 41737998 (-)
XLOC_010981 NA non-coding upstream 224485 43119113 ~ 43124227 (-)
XLOC_010987 NA non-coding upstream 464297 43358925 ~ 43368871 (-)
XLOC_010988 oxr1a non-coding upstream 523004 43417632 ~ 43742343 (-)

Expression


Co-expression Network