XLOC_010972 (thbs3a)


Basic Information

Item Value
gene id XLOC_010972
gene name thbs3a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 42900238 ~ 42933332 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00021447
GCTCTATTATATTCCGTCTTTCAATGCATCGCTGACGGATCTGTTCTGGATATTTTCTGCACCACTTTTGCGTGTATTTTTGTAAACATGAAACAAATGTTTGTACACATTTGGGTCAGTCTGGTCGTGTTGATGTCCGTCTGGTCAGCACAGAGCGACAAGAAACAAGACGTGCCAGTGATAGACGTGTTGGGTTTGGAGGATGTGAAGCAGACCGTGGCCGCGGTGGAGAAGCTCTCATTGGCTCTGAAGACTCTCAGTGACGTGTATGTGATGTCTACTTTTCGTCTTCCTCCAAAACTTGGTGGAGTTCTGCTGGGGCTCTACAACAAACAGGACAACAAGAAGTACCTGGAGGTTGCCATCATGAGCAAGATTAACAAAGTTCTGGTCAGGTATGTCCGTGAGGATGGAAAGCTGCATACAGTGAACATGCAGAGCCCGAATGTTGCGGATGGACGTCCTCAGTCACTGATTCTGCGTGTCGGAGGCCTGCGCCGGGAGTATCTGAGCCTCGAGCTCTATGTGAACTGTCGTCTGGCTGACTCCGCCCAGCGCCTGCCCCCATTGGTGGATTTGCCCAGAGATGCTGAGCTGGTGGAGATACGAAATGGACACAAGGCATATGCTCGGATGCAGGGTTCAATGGATACTCTTAAGCTGGCACTGGGGGGCACTGTTGCCCAGGCTGGCGCTCTCACCGACTGTCCCTTTCAGGGAGACGCTTCTTCATACAACATAGtgaatGGTGAGGTTAATTCTATTCTAGGTGACCACACTAAAGCTCTGATCGGCCAGCTGATCATCTTTAATCAGATCTTGGGAGAGTTGAGAGAGGACATCAGAGAACAGGTGAAAGAAATGTCCCTGGTAAGGAACGCTATTCTGGAGTGCCAGATGTGTGGGTTTCACGAGCCTCGTTCCCGCTGTCAGCCAAACCCCTGTTTCAAGGGTGTGTCCTGCATGGAGACGTTTGAATACCCAGGGTACCGCTGTGGGCCCTGTCCAGACGGCATGACGGGCAACGGCACACACTGTCAGGACATCGATGAGTGTTCAGAGGCTCAGCCGTGTTATACACCGGGTGCTTGTGTCAATACTGCAAGAGGTTTTACCTGTGAGTCGTGTCCCCCTGGCATGTGGGGTCCACCTTTGTCTGGAGTCGGTGTGGAGTATGCTAAGAGTCACCGTCAGgAGTGCTCTGACATCGATGAATGTGTAGATTTGGCCAACGCCTGCACACCCAACTCTGTCTGCATCAACATTATTGGGTCATTTCGATGCGGTCAGTGCAAGACTGGATATGTTGGCAATCAGACAGCCGGATGTTTCCCTCGAAAGTCATGTTCTTCACTCAGTTTCAACCCCTGTGACACGAACGCTCACTGCGTCATGCAACGCAACGGGGACGTGTCCTGCGCTTGTAATGTTGGATGGGCTGGTAATGGTCACACCTGCGGGAAGGACACAGATATTGATGGTTATCCTGACCGCTCTCTGCCCTGCATGGACAATCACAAGCACTGCAGACAGGACAACTGTGTCTACACACCTAATTCTGGTCAGGAAGATGCGGATAATGATGGAATTGGAGATCAGTGTGATGAAGATGCTGATGGGGACGGAATTAAGAACGTAGAGGATAACTGTCGTTTGGTCTCCAATAAAGACCAGCAGAACTCGGACACAGATTCGTTCGGAGACGCGTGTGATAACTGTCCCACCGTTCCCAACATCGACCAGAAAGACACTGATAGCAACGGAGAGGGAGACGCTTGTGATGACGACATTGATGGAGATGGGATTCAGAATGTTCTGGATAACTGTCCTAAAGTGCCGAACCCGATGCAGACGGACCGAGACAGAGACGGAGTGGGAGATGCGTGTGACAGCTGTCCTGAGATCAGCAACCCCATGCAGACGGATGTAGACAATGACTTAGTCGGGGATGTTTGTGACACCAACCAAGACACAGATGGAGACGGACACCAGGACACTCGGGATAATTGTCCCGATATCCCAAACAGCTCTCAGCTGGACTCAGATAATGACGGCATCGGAGACGACTGTGATGAAGACGACGACAACGACGGCATCCCGGACAATCACGCCATCAATGGCATAGGGCCCGATAACTGCAGACTCATATCCAACCCCAACCAGAAAGACTCAGACAGTAATGGAGTGGGCGATGTATGCGAGAATGACTTCGACAATGATTCAGTGATGGATTTGGTTGACGTGTGTCCAGAAAGTGCTGAAGTCACACTTACAGATTTCAGAGCCTATCAGACGGTCATTCTGGACCCGGAAGGTGACGCTCAGATTGACCCCAACTGGGTGGTGCTCAATCAGGGAATGGAAATAGTTCAGACCATGAACAGTGACCCTGGACTGGCAGTGGGTTATACAGCGTTTAACGGCGTGGACTTTGAGGGAACATTTCACGTGAACACAGTGACCGACGATGACTATGCCGGCTTCATCTTCGGCTACCAGGATTCATCTAGTTTCTACGTGGTGATGTGGAAGCAGACCGAACAGACGTACTGGCAGTCCATCCCATTCAGAGCCATGGCTGAACCGGGCCTGCAgctcaagGCAGTGAAGTCTCGTACTGGTCCTGGTGAGTTTCTTCGTAACGCTCTGTGGCATGCTGGAGATACTGATGGAGAGGTGAAGCTGCTGTGGAAAGACCCACGAAACGTCGGCTGGCTGGATAAAACATCGTATCGGTGGCAGCTCAGCCATCGGCCTCAGGTCGGATACATCAGggTGAAGCTGTATGAGGGCTCAGAGATGGTGGCAGACTCAGATGTGGTAATCGACACCTCTATGAGAGGAGGTCGTCTGGGCGTCTTCTGCTTCTCTCAGGAGAACATCATTTGGTCCAATCTGCGCTACCGCTGCAACGATACCGTTCCAGAGGACTTCAGTTCACACCGTAAGCAGGTTCTGATGCACATAAAGGTGTGAAGAACTCCAGTCGCCCTCCGTCTCTCTACATTTCCTAAAACCAGTGTGGAGTCCGTCTGTGTGCGGGCCAAACAACCAGACTGACCAGCGTCTGTCAATCCATCGTGGAGACTGAATGAAAAGAcagaaaagacttttattttacatattttgtgcATTTGAGTCATCGTGGAGCTGTATAATGTGtgagtataagtgtgtgtgtgcgtgtgtgagtgtgtgcgtgtgtgtttgaaaTACCATTAGTGTGTATGCATAAACAATATGTCTTGAAATAAAGGTATATGATGTATTTTCTACAAC

Function

symbol description
thbs3a Predicted to enable calcium ion binding activity and heparin binding activity. Acts upstream of or within mesenchymal to epithelial transition and somite development. Predicted to be located in extracellular region. Predicted to be active in collagen-containing extracellular matrix. Is expressed in several structures, including brain; ectoderm; epidermis; pectoral fin; and pharyngeal arch. Orthologous to human THBS3 (thrombospondin 3).

GO:

id name namespace
GO:0060231 mesenchymal to epithelial transition biological_process
GO:0061053 somite development biological_process
GO:0007155 cell adhesion biological_process
GO:0062023 collagen-containing extracellular matrix cellular_component
GO:0005576 extracellular region cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0008201 heparin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-020708-3 Predicted to enable calcium ion binding activity and heparin binding activity. Acts upstream of or within mesenchymal to epithelial transition and somite development. Predicted to be located in extracellular region. Predicted to be active in collagen-containing extracellular matrix. Is expressed in several structures, including brain; ectoderm; epidermis; pectoral fin; and pharyngeal arch. Orthologous to human THBS3 (thrombospondin 3).

Ensembl:

ensembl_id ENSDARG00000077641

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00021447 True 3279 mRNA 0.50 23 42900238 42933332

Neighbor

gene id symbol gene type direction distance location
XLOC_010971 hjv coding downstream 5610 42883799 ~ 42894628 (-)
XLOC_010970 CR854827.1 coding downstream 25529 42873740 ~ 42874709 (-)
XLOC_010969 txnipb coding downstream 27666 42869054 ~ 42872572 (-)
XLOC_010968 slc4a7 coding downstream 130174 42693247 ~ 42770064 (-)
XLOC_010967 tbx20 coding downstream 376494 42509011 ~ 42523744 (-)
XLOC_010973 mtx1a coding upstream 5527 42938859 ~ 42965192 (-)
XLOC_010974 si:ch211-135n15.3 coding upstream 34765 42968097 ~ 42969598 (-)
XLOC_010975 NA coding upstream 39753 42973085 ~ 42974540 (-)
XLOC_010976 NA coding upstream 41215 42974547 ~ 42993892 (-)
XLOC_010977 nudt17 coding upstream 67496 43000828 ~ 43011501 (-)
XLOC_010626 CR392024.2 misc downstream 22005063 20895112 ~ 20895175 (-)
XLOC_010954 BX649388.1 non-coding downstream 934929 41955855 ~ 41965309 (-)
XLOC_010953 BX649388.3 non-coding downstream 951122 41948075 ~ 41949116 (-)
XLOC_010951 CR318611.1 non-coding downstream 1017678 41882445 ~ 41882560 (-)
XLOC_010944 NA non-coding downstream 1162240 41684868 ~ 41737998 (-)
XLOC_010981 NA non-coding upstream 185781 43119113 ~ 43124227 (-)
XLOC_010987 NA non-coding upstream 425593 43358925 ~ 43368871 (-)
XLOC_010988 oxr1a non-coding upstream 484300 43417632 ~ 43742343 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000027_03212432_03231800 THBS3, THBS3A coding CI01000027 null 3212432 ~ 3231862 (+)