XLOC_010976


Basic Information

Item Value
gene id XLOC_010976
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 42974547 ~ 42993892 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00021450
CGCAAATGGAGGCCTCAGAGTCGAGTTTCCCAGGCTTCAGGTTTCTCAGTCACAGCCGCACAAAGAGGAGCCTGTGCGGGCGACGGGGACGCTGGAGCGACAGcggatgccatttcagctgcaacccattacccATGGGAGAAAcgggagtacccggaggaaacccacgtaaacacaggaagaacatgcaaactccacacagaaatgccaactgacccggccaaggctcaaaccagcgaccttcttgttgtgaggtgacatcgctatccactgcgccactgcgtcgcctcagATCACAAAGGGCTTCGGTGAAGAGCTTTATGCCAACCTGATGGGAGGAAGGATGAAGTTTTACCACACACAGCCTGAAACTGGACTGAATTTACACTCTTGAATGCcttgtaaagggatagttcacgcaaaaatgaaaatgtgcagtTATTTAAATCACCCTCAGATCATCTTTTTTCTTCAGTACAGCATTAAAGAAGAAATAATTCTTGGTGGTTTAAAAAACACATGTCAACAGTATACCAGCACTTTAGGGGTTAAAAatatacaggaaaaacaaaaataacaccCATCGCTCCTGACTGAGGCCCTCTAAAGCAAAATGATTAATCTGTGCAATATGCAGacaattatttacaacattattttaaGCCTGACAAAACAGTTGTGATTGTTTGTAGCAAGAGCttctttaaaggaatagttcacacaaaattacAACTACCCCATCAATACATTCTTGAGGTACATGACTTTCTAATGTCAGATGAACACATTTTATCACTGCTCTTTCAGGTTGTGTAATGGTGTTAGAAGTGCATAAATCTATTATAAAAACCAACCCAATCGCTGGAATTTAGTGACTTgactttataatttaaaaatgagaTATATTgaactagaaaaaaaaatctatatagtctaattctagaaaaaaaaattaaggggcacctatgatgaaaatcaacttttgtaaactgtttgaaCTGTGgaactgtgtatgtgtgtctacagtcatattagagtgacagtaacacaacaaatatcttttttaaaatttcctgacaatgaaaataggacccaaatctcaGTGAATTTCAGGCCCACCACAGCGTGACGTAAGACTGCGGTTTTTcccacccactgaattgattgacaggcaccattGTGGACATATACActtgtccacagaacatttttggCAAATAAACtagcattaaaatatttgttccaactccctgtgatttttcaaaagagcatgtttgtaatgaagacAGTAACATCGCCATGTAATTCTTTACTGCTATAATCACCATGGCCGCATAGTAAAtgctgatgtgtgtttgtgtgtgtgtgtgtgtgtgtgtgctgtcaaaaaaatttgtgtgagactcatcgtttcagaaaggcttgaataaactccaccataaATACAGGAAATAAACTtatttggtatttttgactaatgagctgcaTTTCAGCTTTATTGTGCTaaattgtgtgaatgagtgtgtgtgtctgttattttctctttgtttagCTGTCAAAAAATCTGatgaataaatcttaaaaaagacTAATTGAAATATTTTTGTCTCAAAAACACATCATTTTGCTTCATGAGACGTCTTGGATTTTGTTCACCTGGATAAAGGACGTCATAGACCAAAGAT
>TCONS_00022227
CGCCGTGGCTGCTGGACGGTGGAGGAGACGCAAATGGAGGCCTCAGAGTCGAGTTTCCCAGGCTTCAGGTTTCTCAGTCACAGCCGCACAAAGAGGAGCCTGTGCGGGCGACGGGGACGCTGGAGCGACAGctgcaacccattacccATGGGAGAAAcgggagtacccggaggaaacccacgtaaacacaggaagaacatgcaaactccacacagaaatgccaactgacccggccaaggctcaaaccagcgaccttcttgttgtgaggtgacatcgctatccactgcgccactgcgtcgcctcagATCACAAAGGGCTTCGGTGAAGAGCTTTATGCCAACCTGATGGGAGGAAGGATGAAGTTTTACCACACACAGCCTGAAACTGGACTGAATTTACACTCTTGAATGCcttgtaaagggatagttcacgcaaaaatgaaaatgtgcagtTATTTAAATCACCCTCAGATCATCTTTTTTCTTCAGTACAGCATTAAAGAAGAAATAATTCTTGGTGGTTTAAAAAACACATGTCAACAGTATACCAGCACTTTAGGGGTTAAAAatatacaggaaaaacaaaaataacaccCATCGCTCCTGACTGAGGCCCTCTAAAGCAAAATGATTAATCTGTGCAATATGCAGacaattatttacaacattattttaaGCCTGACAAAACAGTTGTGATTGTTTGTAGCAAGAGCttctttaaaggaatagttcacacaaaattacAACTACCCCATCAATACATTCTTGAGGTACATGACTTTCTAATGTCAGATGAACACATTTTATCACTGCTCTTTCAGGTTGTGTAATGGTGTTAGAAGTGCATAAATCTATTATAAAAACCAACCCAATCGCTGGAATTTAGTGACTTgactttataatttaaaaatgagaTATATTgaactagaaaaaaaaatctatatagtctaattctagaaaaaaaaattaaggggcacctatgatgaaaatcaacttttgtaaactgtttgaaCTGTGgaactgtgtatgtgtgtctacagtcatattagagtgacagtaacacaacaaatatcttttttaaaatttcctgacaatgaaaataggacccaaatctcaGTGAATTTCAGGCCCACCACAGCGTGACGTAAGACTGCGGTTTTTcccacccactgaattgattgacaggcaccattGTGGACATATACActtgtccacagaacatttttggCAAATAAACtagcattaaaatatttgttccaactccctgtgatttttcaaaagagcatgtttgtaatgaagacAGTAACATCGCCATGTAATTCTTTACTGCTATAATCACCATGGCCGCATAGTAAAtgctgatgtgtgtttgtgtgtgtgtgtgtgtgtgtgtgctgtcaaaaaaatttgtgtgagactcatcgtttcagaaaggcttgaataaactccaccataaATACAGGAAATAAACTtatttggtatttttgactaatgagctgcaTTTCAGCTTTATTGTGCTaaattgtgtgaatgagtgtgtgtgtctgttattttctctttgtttagCTGTCAAAAAATCTGatgaataaatcttaaaaaagacTAATTGAAATATTTTTGTCTCAAAAACACATCATTTTGCTTCATGAGACGTCTTGGATTTTGTTCACCTGGATAAAGGACGTCATAGACCAAAGAT

Function

GO:

id name namespace
GO:0001732 formation of cytoplasmic translation initiation complex biological_process
GO:0031290 retinal ganglion cell axon guidance biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0006413 translational initiation biological_process
GO:0048856 anatomical structure development biological_process
GO:0006457 protein folding biological_process
GO:0010467 gene expression biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0010499 proteasomal ubiquitin-independent protein catabolic process biological_process
GO:0061061 muscle structure development biological_process
GO:0002181 cytoplasmic translation biological_process
GO:0032502 developmental process biological_process
GO:0002183 cytoplasmic translational initiation biological_process
GO:0007418 ventral midline development biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0021510 spinal cord development biological_process
GO:0043248 proteasome assembly biological_process
GO:0019773 proteasome core complex, alpha-subunit complex cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:0022624 proteasome accessory complex cellular_component
GO:0044445 obsolete cytosolic part cellular_component
GO:0005832 chaperonin-containing T-complex cellular_component
GO:0005838 proteasome regulatory particle cellular_component
GO:0005839 proteasome core complex cellular_component
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0101031 chaperone complex cellular_component
GO:1905368 peptidase complex cellular_component
GO:1905369 endopeptidase complex cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005634 nucleus cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0000502 proteasome complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0070993 translation preinitiation complex cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0008135 translation factor activity, RNA binding molecular_function
GO:0070003 threonine-type peptidase activity molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0004298 threonine-type endopeptidase activity molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000987 cis-regulatory region sequence-specific DNA binding molecular_function
GO:0003743 translation initiation factor activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:0051082 unfolded protein binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko00240 Pyrimidine metabolism
ko03020 RNA polymerase
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00021450 False 1685 lncRNA 0.39 3 42974547 42993864
TCONS_00022227 True 1698 lncRNA 0.39 3 42974547 42993892

Neighbor

gene id symbol gene type direction distance location
XLOC_010975 NA coding downstream 7 42973085 ~ 42974540 (-)
XLOC_010974 si:ch211-135n15.3 coding downstream 4949 42968097 ~ 42969598 (-)
XLOC_010973 mtx1a coding downstream 9355 42938859 ~ 42965192 (-)
XLOC_010972 thbs3a coding downstream 41215 42900238 ~ 42933332 (-)
XLOC_010971 hjv coding downstream 79919 42883799 ~ 42894628 (-)
XLOC_010977 nudt17 coding upstream 6936 43000828 ~ 43011501 (-)
XLOC_010978 si:dkey-7j14.5 coding upstream 20525 43014417 ~ 43026273 (-)
XLOC_010979 si:dkey-7j14.6 coding upstream 34187 43028079 ~ 43041450 (-)
XLOC_010980 sema4aa coding upstream 54080 43047972 ~ 43065164 (-)
XLOC_010981 NA coding upstream 125221 43119113 ~ 43124227 (-)
XLOC_010626 CR392024.2 misc downstream 22079372 20895112 ~ 20895175 (-)
XLOC_010970 CR854827.1 non-coding downstream 99838 42873740 ~ 42874709 (-)
XLOC_010954 BX649388.1 non-coding downstream 1009238 41955855 ~ 41965309 (-)
XLOC_010953 BX649388.3 non-coding downstream 1025431 41948075 ~ 41949116 (-)
XLOC_010951 CR318611.1 non-coding downstream 1091987 41882445 ~ 41882560 (-)
XLOC_010987 NA non-coding upstream 365033 43358925 ~ 43368871 (-)
XLOC_010988 oxr1a non-coding upstream 423740 43417632 ~ 43742343 (-)
XLOC_010989 LO018541.1 non-coding upstream 561572 43555464 ~ 43555579 (-)
XLOC_010992 NA non-coding upstream 1160592 44154484 ~ 44159865 (-)

Expression


Co-expression Network