CI01000095_02295150_02298027 (SOSTDC1A)


Basic Information

Item Value
gene id CI01000095_02295150_02298027
gene name SOSTDC1A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000095
NCBI id null
chromosome length 6456983
location 2294733 ~ 2298075 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000095_02295150_02298027.mRNA
AGATTCCAGGAGCATCTCTCCACTGCCTGCGGGTTATTTCACATCACCATGTATATAAACGCACCCGAATCGTGCAATTTCATGTTTTTATTTTGCTTTTTAATAAGGAGTGGTCTGACTTTGAAGAATGATGCTACGGAGATTTTCTACACCCATGTGGTCAGTCCCGTTGAGGATACTACTCAGAGCAACGCGTCTCTGAACCGCGCGCGCACCGGTGGAAGAGGCTTCACTGCGCACGAGAGAGAACGAGTCCCAGTCGGCTGCAGAGAGCTGCGGTCCACAAAGTACATCTCAGACGGCCAGTGCACCAGCATAAACCCTGTTAAAGAACTGGTGTGCACAGGACAGTGTCTTCCTGCTCAGATGCTGCCCAATTGGATCGGCGGATACGGTAGGAAGTTCTGGAACCGCCGAAACAATCAGGACTGGCGCTGCGTGAACGACAAAACCCGGACCCAACGGATTCAGCTCCAGTGCCAGGATGGCAGCACCAGGACCTACAAGATCACAGTGGTGACCTCCTGCAAATGCAAAAGATACACACGGCAGCACAACGAATCTGGAGTCAAGTCTGAGGGATACGCTCATACACAGATAAAAAAGCAAAAAAACAAAGGGGGCACTGGGATGGAACGCTAAATGAGTCTCTGCTCGGACTGAGCTACTAGATTTTCTCATTTAAATGAACTTGGTATGAACGAGAGAGCTTGTGACGTCAGCTCACAGGAGCAATGAACTTTCTTTGTGCTGCCTTTGTGAGCAAGTGCAGGGCTCTGAGTTCACTGTGAAACTTTGGAAGCAAGAGAAAAGACTAAATCTCATCATCAACATAATCACAATTAACATGCAGCCCATGTGACCCTGATGTGTCGAAAGAGATTGGCAATGACAACTGCATATTGCATTACAAAAATGATTAGAAACACGCTTGTGATTCTAATAGTTTTTGTCATCACTGCCTGATATGTGTGGTAATCACTTGCTGTAGTATATACTTTAAGCAACAATAGGAGCAGTTCTCAAACCTGGGAAATGCATAGCTACATGTGAATTAAA

Function

symbol description
sostdc1a Predicted to enable BMP binding activity. Predicted to be involved in negative regulation of BMP signaling pathway and negative regulation of Wnt signaling pathway. Predicted to act upstream of or within Wnt signaling pathway. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Orthologous to human SOSTDC1 (sclerostin domain containing 1).

NR:

description
Zgc:110293

GO:

id name namespace
GO:0003674 molecular_function molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000095_02295150_02298027.mRNA True 1059 mRNA 0.46 2 2294733 2298075

Neighbor

gene id symbol gene type direction distance location
CI01000095_02282657_02292145 ISPD coding downstream 2588 2282156 ~ 2292145 (-)
CI01000095_02215864_02225877 NA coding downstream 68856 2215349 ~ 2225877 (-)
CI01000095_02185751_02210428 AGMO coding downstream 84305 2185751 ~ 2210428 (-)
CI01000095_02108777_02148734 DGKB coding downstream 145999 2108777 ~ 2148734 (-)
CI01000095_02066069_02074313 ETV1 coding downstream 220420 2065610 ~ 2074313 (-)
CI01000095_02302091_02312610 ANKMY2, ANKMY2A coding upstream 3066 2301141 ~ 2312610 (-)
CI01000095_02324652_02326773 NA coding upstream 25418 2323493 ~ 2328467 (-)
CI01000095_02348321_02380767 BAG6 coding upstream 49598 2347673 ~ 2381968 (-)
CI01000095_02418530_02482423 GABBR1B, GABBR1, GABBR1A coding upstream 120285 2418360 ~ 2482423 (-)
CI01000095_02495285_02504431 NA coding upstream 196979 2495054 ~ 2504431 (-)
G310006 NA non-coding downstream 260152 2034084 ~ 2034581 (-)
G309981 NA non-coding downstream 280281 2011593 ~ 2014452 (-)
G309962 NA non-coding downstream 323517 1969938 ~ 1971216 (-)
G309800 NA non-coding downstream 330179 1963378 ~ 1964554 (-)
G309801 NA non-coding downstream 332947 1960112 ~ 1961786 (-)
G309825 NA non-coding upstream 32353 2330428 ~ 2337810 (-)
G309828 NA non-coding upstream 46310 2344385 ~ 2345941 (-)
G309791 NA non-coding upstream 194533 2492608 ~ 2493466 (-)
G309814 NA non-coding upstream 219244 2517319 ~ 2517542 (-)
G310145 NA non-coding upstream 298764 2596839 ~ 2597192 (-)
G309753 NA other downstream 1112975 1178597 ~ 1181758 (-)
G309626 NA other downstream 1206567 1085588 ~ 1088166 (-)
G309815 NA other upstream 365255 2663330 ~ 2731704 (-)
G310207 NA other upstream 894023 3192098 ~ 3222668 (-)
CI01000095_03528759_03538412 NA other upstream 1232837 3528463 ~ 3539055 (-)
G311036 NA other upstream 2061586 4357325 ~ 4362626 (-)
G311701 NA other upstream 2850950 5149025 ~ 5154494 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_009387 sostdc1a coding NC_007126.7 CM002899.2 34562197 ~ 34567370 (-)