XLOC_010981


Basic Information

Item Value
gene id XLOC_010981
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 43119113 ~ 43124227 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00022228
cttttattaacattttaatttattgaaaaaacaaaacatgatcatACATGATAACATTAGGTGAACTCTTAAAACATATTGAGGCTAAATTATAATGAATATATGATATTCATCTCAGTGCGCCCTAATTATCCTCATACCTTTAATTCCTGTCACTGTCCAACAGAACATCAAGGAAACGATAGAGAAATACATTCACAAATGTCTGTAAAAAAGGCGACATTTCTGTAGTGTTTTAAATAGATTCGCACTTTACTTGAAATCAAAGCATAGAGATCCATTCACACCAAAAACCAAGAACATATTGTTGTCCAAATGTCCTGTTTGTTGTGCATGTAAATGTTTGAGCTCTTTAAAGCAGGACGGATTGATTGGCTGCATTTAAATTAGTGAGCTAATTATAGCAGGaaggattctgattggctgacaatTGTCTTATTCATTTGCTGGGAATAAAAGCATTCCAAGAGTTATTCCAATGGTTTCATTCTGTTTATTAAACGTGCCCTGCAGATGTTGTTTATCAGCTGAGCAAAAAAAAGTCTTGACATAAATTACCTTTATTATGTGGAAACAGACCAaaccaaaacaataaacaaaacggAACAAAACTAAACAGAACAAAATGATACAAAaggaaacaaaactaaactaaattaaacaataaaaaataaaacagaactaaacaaaacaaaacaataaaacagaacaaaacagaccAAAGCAAAACAATAAACTAAAATGTAACAATTCTAAactaaacagaacaaaacaatttGGATCTAAATTAAACaaaggaataaaaaaacaaatcggAACAAAATGGACCaaaacacaacaataaaaaaaacatatataaaaaaatatgaatgaaaccaaaacaataaactaaactaaacaaaatggaacaaaactaaacaataaaaaataagaacaaaTCCGACCAAACCAAAACAATAAACTAAACGTAACAAATCTAAACGAAAcgaaacaacataaaaaaaactaagcaaaacaaaacaataacaaataaaacagaacaaaacggaccaaaacaaaacaataaataaaacggaaTTACAAAATACAGATGAAACCAATACAATAAACTAAACTGACCAAATTCAGAACAAAAttagacaaaacaaaaataaaaaataaaacagaactaaacaaaacaataaaacagacCAAACCAAAACAATAAACTAAACGTAACAAATCTAAACTAAACGGAACAAAAcaatttggaacaacatgaaacaaagaaataaaaaacaaatcgaaacaaaatgaaccaaaacaaaacaataaataacaaaacagaacTAAAAAAATATAGACGAAACcaaaacaataaactaaacaaagccgaccaaaacaaaacaaaaaataaaaaactaaactaaacaaaacggaccaaaccaaaacaataaacaaaacaaaaaattcaagGGAATCGTTTTCCAGGACACAGTGAGGGCACTAAAGGACAGTGAGGGTTTACCTTTAATATGTGCTGTTAGTGTGACCTATTCATCTGCTATaatttatatggattttttttagttCTCGTCCTTGGTGTGACTGTGCCTCAGGTACTGCAATGCATTTCGGTCATTCCACTGCACATTCAGTAATTTTAATTGCACATTATAAAATAATAGGGCTGTGAAAAAACCTGACACAGAAAAACTGGCGTTGAACAATGTAAAACATGCTGTTCACATGTCACAGATGGCACAGAAATGAAGTCACGAACAGGCGGACAAGACATTCTTTACCACTAAGATTATGGATGTTCAGCAAGGCAAAATACGAGCCAAAAAGTCTATTTGAAATGAGTGCAAATGAAGGGAATTCTGCATACGTGTTTCCCTAAGATTTCTGTAGTGTGCCGATGCTAATGAGCTTAATACGTTCCGTCAATTTCATATACAACTGGTGGCTAAGCATGCCTCTTAATAAGCAATTGATGATCAAAGTATTAGAAGTGATTCTTTGACTGTTTAACACAACTTTACCAAttaataatgaatttaataaacaaataggtTGCTTCAGATTATAGAGCAgccaattaattaaaaacaaaccatCAAATACATTAATTATCATAAGCTGATTGAGCATCTGAATAAAGAGATGCTGCCAAAAGTTacaattctgtcttcatttattcatactTGACGTGTTCTAAACAATTTCATAGTTTTGTTCAGTTGAatgtaaaagaagatattttgaagaatgttgcaaattGGTAACTATTGCCATCTACAGTAttttgttttccctactatggtaagaacataagaagatattttaaagaatgttggaagttggtaaccattgacttccatggtatttttttcttctatggTATGAATATAAaagatatcttgaagaatgttggaaattggtAACCATTGAAGTCCATAGCATTTCTTTCCTACTATGGTATGAATataagagaagatattttgaagaacattgGAAACCGGTAAcaattgacttttatagtattttgtttttttctactatggtaTGAATATAAGACaaaatattttgaggaatgctggaaactggtaaccattgacttccatagtatttttttcctttctATGATATGAACataaaagatattttgaggaatgttggaaattGGTAACTATTGGCtgctaaagtattttttttttttttctactatggtataaatataagagaagatattttaaggaatgttgtaaactggtaaccattgacttttatagtatttttttcctaccACGGTATGAatatgaaagaagatattttgaaaaatgttggaaaccattggGCAAACatctatattttttgttttatttttatttctattttgtttttcctactatgtttATGACAGTAAAAgatagaatgttggaaaccggtaaccattgatatatttagtatttagtttttcctactatggttttagtgtaaaagaagatattttgaagaatgttggaaaccattgggtaaccattgacatctttaatattttgtttttcctaatatggtttgtatataaaaaatatattttaaagaatgtttaaaattggtaacaattgacttctatggtattttgttttttttactatgatatgaatacaaatgaagatattttgaagaatgttggaaaccagtaaccattgggtaaccattgacatctttaatattttgtttttcctaatatggtTTGaatataaaagaagatattttaaagaatgttgaaaattggtaaccattgacttctatagtattttgtttttcctactatggatattAGTggttaaatgttttcttttacattaaacagaacaaaaacttTTTGAGGGGGAGTGgggatgtatttaaaaaaaagagctaATTGAAAGACATTATATTGCTGTAGCAGATGAACAGACATTTATACAGTGGCTTTACAAGTcaatacataatatttatgtTCATCTCAATGAACATCACTGGCCTAAAGTCCTCTTCATTATAaagttaaattttgcaacatacaaacaaacaaacaaacaaacaaacaaacaaacaaacaagtttgATTCGCTCTAGAGGTAGAATAATCACAGCATTCACTGTACACTAAAATAAGAAGGAATTTTTGGCTGGATTATTTGTgtcgtctttaaaaaaaaaataaataaatcaataccgGCAATTtctgttcacacaaaaatgacaatttactgcAGATTTACTCAGGTCAGCAAATATGTTGGTAAACTTTTTCTTCAGTAAAGCATTCAAGAAGAGTTTTGCTGAAACTGTGGCCCTTTGTGACtcaaaatgcaagtcaatggatATATTGAGagacataaaaacaaacaggcaaaataaaattaagaccAGTTGCTCCTGATAATACCTGAATGTATTATAAAGAGAAACCTTTactctgtgcaaaaaaaaaaaaaaaaacttatttaccAAATTTAATCCACAGAATCTGCAAATGGTCTTTTGCCTGGTACCTTGCATTTTATGACCACAGCTAAAAATCTCTAATGTTGTATTGAAGAAAAAGAACTTTGATGGTCTGTACAGTGAGTCAATCAACAGCAATTTTGTCACTTCTGGATAAACCACATCTataaaaatcctttatttttggTTATAAATACATTTCTTTACCCCAAATCTAATAGAGCATATTATTTATCGTCCACattattcttaattattttacaaatgccTGACAATAGATGGCACCATTGCACAACAGCGACTATCTATGAGTGATGATGAGAAAAATGTGATGTTGAGTGCTAGATGAGAATGTTAATCACAAAACTCATGAATATGTAAGAGAACAGAGTGAATCTCAAagactgaaaaaatatattaacattcAGAGTAAAGGCAAGAAAACAAAGCAATATTTGTTGTTGAACACGCTTCTTTGACACAATTAGACCAATTCATATTGATAGGGCTCCGTTTTTTCAATCTCACAATCCAAATGATTCCTAATAAATTAAAAAGGGGTCATGTCCTAAATATTTCCCCCTCACTGAAATATCACAGCCAATGATAGTTAGTGTTTTGCAGTGTGTGTAAAGAAAATAGTTAACGGTTTTAGATGCCATGGTGATTCTAGTTTTTTAAGTGATTACATTATTCACTATAATTGATATAATTTATAATGAAATGTGGATTAAAAATTCGTATAAACTTCGTATATATCTGTGACAGTTTAGTTTGTGATATGCTATGTGTTTGAATGTTTATAAATCATCATTTTCCAGAACAAAGGGCATTTAAGACCAATCATGATTTAGCAGAGgttgaaatgttattttaagggGACAAAATAAGACACAACAATCAGTATGAATTATGAAATTAATATaaggattaaaatataaaaagtcc

Function

GO:

id name namespace
GO:0001732 formation of cytoplasmic translation initiation complex biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1990399 epithelium regeneration biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0006413 translational initiation biological_process
GO:0048562 embryonic organ morphogenesis biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0070654 sensory epithelium regeneration biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0006518 peptide metabolic process biological_process
GO:0048048 embryonic eye morphogenesis biological_process
GO:0002181 cytoplasmic translation biological_process
GO:0002183 cytoplasmic translational initiation biological_process
GO:0007417 central nervous system development biological_process
GO:0007420 brain development biological_process
GO:0060322 head development biological_process
GO:0009790 embryo development biological_process
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0005854 nascent polypeptide-associated complex cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0070993 translation preinitiation complex cellular_component
GO:0008135 translation factor activity, RNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003743 translation initiation factor activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00022228 True 4926 lncRNA 0.30 2 43119113 43124227

Neighbor

gene id symbol gene type direction distance location
XLOC_010980 sema4aa coding downstream 53949 43047972 ~ 43065164 (-)
XLOC_010979 si:dkey-7j14.6 coding downstream 77663 43028079 ~ 43041450 (-)
XLOC_010978 si:dkey-7j14.5 coding downstream 92840 43014417 ~ 43026273 (-)
XLOC_010977 nudt17 coding downstream 107612 43000828 ~ 43011501 (-)
XLOC_010976 NA coding downstream 125221 42974547 ~ 42993892 (-)
XLOC_010982 slc25a40 coding upstream 2025 43126252 ~ 43139257 (-)
XLOC_010983 cldn12 coding upstream 103497 43227724 ~ 43233509 (-)
XLOC_010984 washc5 coding upstream 167482 43291709 ~ 43317927 (-)
XLOC_010985 atad2 coding upstream 195115 43319342 ~ 43344859 (-)
XLOC_010986 FO704821.1 coding upstream 228879 43353106 ~ 43356018 (-)
XLOC_010626 CR392024.2 misc downstream 22223938 20895112 ~ 20895175 (-)
XLOC_010975 NA non-coding downstream 144573 42973085 ~ 42974540 (-)
XLOC_010970 CR854827.1 non-coding downstream 244404 42873740 ~ 42874709 (-)
XLOC_010954 BX649388.1 non-coding downstream 1153804 41955855 ~ 41965309 (-)
XLOC_010953 BX649388.3 non-coding downstream 1169997 41948075 ~ 41949116 (-)
XLOC_010987 NA non-coding upstream 234698 43358925 ~ 43368871 (-)
XLOC_010988 oxr1a non-coding upstream 293405 43417632 ~ 43742343 (-)
XLOC_010989 LO018541.1 non-coding upstream 431237 43555464 ~ 43555579 (-)
XLOC_010992 NA non-coding upstream 1030257 44154484 ~ 44159865 (-)
XLOC_010993 NA non-coding upstream 1056548 44180775 ~ 44295549 (-)

Expression


Co-expression Network