XLOC_010982 (slc25a40)


Basic Information

Item Value
gene id XLOC_010982
gene name slc25a40
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 43126252 ~ 43139257 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00021465
ACACATGGCATATTTGGTAAGCGCAATGGCGCACACTGGTGAATAAGCGTGAAAGTCATGACGATTCACGTGAATTCGTAATTTTTTTTTGGATAGCATTGATGACATTGCTTTTTTTCTTTCGGGGTTACATAGCGTATGCTatttacatcattttttaaatctCAGCAGTTGTCAGTTGTAATGATACACTGGAAACTGTCAATGCAATAAGGGCTGATTATACATGATCAAGGCTTTGAGATGAGCTGTCAGGAAAGTTCTCCAGGTCCCCCGGGGGACATTACACCCTTCCAGCAGATGATGGCGTCCTGCTCCGGGGCAATTATTACATCACTCTTGGTAACACCTCTGGATGTGGTAAAAATCCGACTGCAGGCCCAAAAGAATCCTTTCCCCAAGGgaaaatgttttgtttactgtAACGGACTGATGGATCATATATGCGTCTGCGAGAATGGCAATACAAAGGTCTGGTACAAAGCACCCGGACATTTCAGCGGCACATTGGACGCCTTTCTTAAGATCATACGTATGGAAGGAATCAGGTCACTATGGAGCGGCCTTCCTCCAACGCTAATAATGGCAGTGCCTGCGACTGTGATTTATTTCACATGTTACGATCAGCTGTTTGCTCTTCTCAAGCTAAAGATGGGCGACCGATCGGATCTGGCACCGCTCTTTGCTGGCGCTATTGCAAGAGTGGGCTCGGCCACAGTAATCAGCCCCCTGGAGCTCATCCGCACCAAGATGCAGTCTGAGAAACAGTCGTACAGAGAGATGAGTGCTGTCATCCGGTCAGCACTGAAAAACGAGGGTTTGAGGTCTCTGTGGAGGGGCTGGGGACCCACGCTGCTACGGGACGTCCCATTCTCAGCTATGTACTGGTTTAACTATGAGAAGGGCAAATGGTGGCTCTGTAAACGCTACAGCTGTAGCGAACCGACTGTTGCCATCACATTCACAGCTGGAGCTCTGTCTGGATCAATCGCGTCGATCATCACACTGCCGTTTGATGTGGTTAAAACAAAACGACAAGTAGAAATGGGTGAACTGCAGACCATGAAGTTGTCCACGCAAGTCTCATCCAGCACATGCAGTGTGATGAAAAGGATAGTGGCTGAAAATGGAGTATCAGGACTCTTTGCAGGTTTCATGCCGAGGCTGATTAAAGTGGCTCCTGCGTGTGCTATAATGATCAGCACATATGAGTTTGGGAAAGCTTTTTTCCGCAAATACAACCATCAGAAAGAGGGTCAAGCAACTGCGTCCCAGCACATCATTTCTCACACAGAAAAGCACTAACACTCGATCACGAACATGCCGATAAATTACTACACAATCCTTTTTCCATCATGTATTATATGTTGCTGCCTATCTAAAAGCAGAGATTATAGATTTGCTGTGAATAAAACAATGTACCTTCTCCTGTAAATTTATAAATAGGGGCACGTTCCTCCCAGATCATTCAGATTacaatttaatatttgtattttgatatttatttattgatttaaatgagcTGAAGAAACTTAAAGCCTATGATATGAACTGATATTAAGGTGATGCCAAATTATTTGCATCGCGTTcactgtgatttattttattctgtgttttaatttgttgtttaagCGTCTTAGTAATGTTTCAGTCCTGCCTTTTGTAGGTGTGTGTTGAAACCAATgccaatgtgtgtgtgaatggtgcCAAAACGACTGAAGCTGTTGTGAGTGAAGGCCAGGTTGAATAATCAGACTATTTGAATTGTTCTGTATGCAACTGTTTTTTAATTGCTGATTAGTGTCTGACTATTAATCTGAATATCCACAGCGCTTTTAAAGAATTTCACGGTGTGTAATTCAGTTCGTTTTTTTCAAATTGATTCAATAATGAATTTTTTGAAA
>TCONS_00021466
GGATAAACACATGGCATATTTGGCTTTGAGATGAGCTGTCAGGAAAGTTCTCCAGGTCCCCCGGGGGACATTACACCCTTCCAGCAGATGATGGCGTCCTGCTCCGGGGCAATTATTACATCACTCTTGGTAACACCTCTGGATGTGGTAAAAATCCGACTGCAGGCCCAAAAGAATCCTTTCCCCAAGGgaaaatgttttgtttactgtAACGGACTGATGGATCATATATGCGTCTGCGAGAATGGCAATACAAAGGTCTGGTACAAAGCACCCGGACATTTCAGCGGCACATTGGACGCCTTTCTTAAGATCATACGTATGGAAGGAATCAGGTCACTATGGAGCGGCCTTCCTCCAACGCTAATAATGGCAGTGCCTGCGACTGTGATTTATTTCACATGTTACGATCAGCTGTTTGCTCTTCTCAAGCTAAAGATGGGCGACCGATCGGATCTGGCACCGCTCTTTGCTGGCGCTATTGCAAGAGTGGGCTCGGCCACAGTAATCAGCCCCCTGGAGCT

Function

symbol description
slc25a40 Predicted to act upstream of or within transmembrane transport. Predicted to be located in mitochondrial inner membrane. Predicted to be integral component of membrane. Orthologous to human SLC25A40 (solute carrier family 25 member 40).

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005739 mitochondrion cellular_component
GO:0005347 ATP transmembrane transporter activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040718-52 Predicted to act upstream of or within transmembrane transport. Predicted to be located in mitochondrial inner membrane. Predicted to be integral component of membrane. Orthologous to human SLC25A40 (solute carrier family 25 member 40).

Ensembl:

ensembl_id ENSDARG00000015856

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00021465 False 1904 mRNA 0.43 11 43126252 43139251
TCONS_00021466 True 524 mRNA 0.50 7 43135965 43139257

Neighbor

gene id symbol gene type direction distance location
XLOC_010981 NA coding downstream 2025 43119113 ~ 43124227 (-)
XLOC_010980 sema4aa coding downstream 61088 43047972 ~ 43065164 (-)
XLOC_010979 si:dkey-7j14.6 coding downstream 84802 43028079 ~ 43041450 (-)
XLOC_010978 si:dkey-7j14.5 coding downstream 99979 43014417 ~ 43026273 (-)
XLOC_010977 nudt17 coding downstream 114751 43000828 ~ 43011501 (-)
XLOC_010983 cldn12 coding upstream 88467 43227724 ~ 43233509 (-)
XLOC_010984 washc5 coding upstream 152452 43291709 ~ 43317927 (-)
XLOC_010985 atad2 coding upstream 180085 43319342 ~ 43344859 (-)
XLOC_010986 FO704821.1 coding upstream 213849 43353106 ~ 43356018 (-)
XLOC_010987 NA coding upstream 219668 43358925 ~ 43368871 (-)
XLOC_010626 CR392024.2 misc downstream 22231077 20895112 ~ 20895175 (-)
XLOC_010976 NA non-coding downstream 132360 42974547 ~ 42993892 (-)
XLOC_010975 NA non-coding downstream 151712 42973085 ~ 42974540 (-)
XLOC_010970 CR854827.1 non-coding downstream 251543 42873740 ~ 42874709 (-)
XLOC_010954 BX649388.1 non-coding downstream 1160943 41955855 ~ 41965309 (-)
XLOC_010988 oxr1a non-coding upstream 278375 43417632 ~ 43742343 (-)
XLOC_010989 LO018541.1 non-coding upstream 416207 43555464 ~ 43555579 (-)
XLOC_010992 NA non-coding upstream 1015227 44154484 ~ 44159865 (-)
XLOC_010993 NA non-coding upstream 1041518 44180775 ~ 44295549 (-)

Expression


Co-expression Network