XLOC_010983 (cldn12)


Basic Information

Item Value
gene id XLOC_010983
gene name cldn12
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 43227724 ~ 43233509 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00021467
AGTGACGTACTGCCGCGCCTGCGGTCAGTGTGTTGTGCGCGCTCCCGAAGAAGAAGAGTGTTCATACAACACGGTGGAACCCAACGACAGAAAACCACCGATTTAAGTGAGAAAATGACTGCTACATCACCTAAACATTCATTAAACGCTCGACATTAATCAGGTATCATTTGCTGACTTCAGCCATGTCTTGTCGTGACATTCACGCCACCAATGCGTTCGCCTTTGTTATTGCGATGCTGTCGGTCGGTGGTTTGACCGTTGCTACACTCATTCCTCAGTGGAGAACCATGCGCCTGCTTACCTTCAACCGTAATGCCAAAAATGTGACTGTATACGATGGCCTGTGGACCAAGTGTGTACGGCGGGATGGCTCTTCAGGCTGCTATTACTTTGACTCAGACTGGTACGCAAAAGTAGACCAGTTGGACCTCAGATTGCTGCAATTCTGTTTACCTACTGGTCTGCTGTTTTCCAGCTTGGCTCTTCTGCTCTGTCTTACTGGCATGTGTAAAACTGCTTGCTGCTCCAAAACCCCTGACGACATCAAGAACTCTCGCTGCTTGGTCAACAGCTCAGGCTGCCATCTAGTAGCTGGGATGCTTCTGTTTCTAGGTGGAGCGATCGCCATGCCACCCTCCGTCTGGTTCCTCTTCCACACCCGTCACCTAAATGAGCGCTACGATCATTTATTTGCTGTTGAGTTTGGGGTGTATGTGGCCATCGGCAGTGCTGGTGGTTTAATCCTGGCTGCTCTGCTGATGTTCATGTGGTATTGTATGTGTAAAAAACTGCCTTCGCCTTTCTGGCTGCCTCTTCCTGAAGTGCCCACAATGACCCAAAGCCTCTCTGCGCAGCCTCTCATGACCAACGGTTTGCCTACTCCCGTGACGTACGCGCCCCAGAGCTTCCCTCCAGCCGTTCTGGACGCCCCTGCTTTTGTCCCAATGCAGGGTTACCCTCAACCTGCATCCACACAGCCTATGCCCCCCCACGTCTACATGCCACAAATGTCTGTGCCAGATGGTTATGGCTCAGAAGTTGGAGCCTCGCAGGTTTATAGTTATGCCCCCTCACAAAGCTACGCTCCTTCTCAGGGATATGCTCCATCACAAAGCTACGCGCCATCACAGAGGTACGCCGGACACCGATATTCGACACGCTCCCGAACGTCAGGGATTGAGATTGACATTCCTGTCCTCACAGATTGAGATTGGCTGTCTAAGGATATTTCaaattaaaaaggtcatatttagAAATTAGACAACAACTCTGATGGTAAATTTAAAGTCATGTAAATGGTTAAATAGAAAGAACAGCCTTCATTTGGTTAATGTCGCCTCTAATTCTTAGGACTAAAATGGCCAGAACTATCAGAAAAGTGATTTGAGCAGATAGAAAGGTGACATTCTCATATAACCTCGTATTACAACTAAAGTCTGCAGTAAAGCAACTCtgaacacatcaaaccttgaagcagatgagctactgCAGAAGAAGAGCAAACTGGTGACACTCCTGTCTGCTAAGAAAACTGAGGTTCCCATTGACATGAGCTCAACAAAACTATGACAGAAAATTGTAGGAAGGTTGGCTATTCTGATACATCTTAGGCCCATTTCAGTTCTACCTCTTAAACCCTTCCACTTACTCTTACGCCTCCAAGCAAAAGAGAATCAGTAAGCGAAAGTGCCGTTTTTATTGAATCAAAAAGGTCATAATTAGAAATTAGAGAACAACTCCGATGGTAAATTTGAAGACATGTAAATGGTTAAATTGAAAGATTAGCCTTTATTCAGTTGATGTCGCCGGTGCCTCTTAATTATTAGTactgaaaatggccaaaaaaggaaaaatcgatcaaaaaaattatttgagcAGATAAAAAGGTGACATTTTCTCAAATAACCTCTTATTACGATTAAAGTCTGCAGGAGAGCAACTCTGAACACAGCAAACCTTGAAgtagatgagctacagcagcagcagaagaagagcaCTCTGGTGACACTCCTGTCTGCTAGGAAAACTGATGCTCCAATTGACATGAATTCAACAAAACTCGATATCAGATCAGGCAACCATTTTACAATCTTCTGTTAACACTTAGGCCCAATCCAGCCTTCCACTCACTGATTATTTTTTGCTTGGAGGCGCAGTAAGGCGAAATGCCCTCCAAATACAAAGGTCATAATTAGAAATTAGAGAACAACTATGATGGTAAATTTGAAGTCATGTAAAttgtaaaattgaaaaataaGCCTTTATTCAGTTGATGTCACCAATGCCTCTTAATTCTTGGCactgaaaatggccaaaaaaagggaaaaaaacaacccGAAAAGCGATTTGAGCAGATAGAAAGGTGATGTTGTCTCAAATAACCTCTTACTACAACTAAAGTCTTCAGGGGAGCAACTCtgaacacatcaaaccttgaagcagatgagctacagcagcagaagaagagcGCACTAGTGACATTCTGGTCTGCTAAGAAATCTGATCATAATTAGAAATTAGAGTACAACTCTCATGGTGAATTTGAAGTTATGTAAATGGTTAAAGATACGCCTTTATTCAGTGGATGTCGCAGATGCCTCTTAATTCTTAGCACTAAAATGGCCAAAAAGGGAAAAAAGGTCATGAAAGCAGTAACACTAGCTGAAGTTGTGCATCTCGCTTTATAAtagtttcatttataaaacacaagcaaaacaaaCTTGTTAATAATTTCACTGAGTATGTCAAGGTGACTTCACTTAATTCATACTCATGTTTCGTGTTGTTACTCTGCTTTTAAATGTCAGTAGAAACACTGAATATAAAGTTGATTTTAAGCACTGTTTTAACCTTTAAGCAAATATTTCTGCTAATATCTAAATGTGACTATTACAGTAAATATTAGAAAGAGATGTAACACTGACTGCTGAAACTGTATTATTCTCAGTGCCATGAAGTTGGACGTTTTCTTTTTTAAGCTTAGTGAATATGTTGGTTTATTGCTCTAATATCTGTACATCATGTTTTCATGGGGTTTTATGCAGATGTCACAATGTTAAACGAACACCTAGTAgaggttttttatatatacatggaAGAATCATCTCTGCCTGATGCCTTTGTGCAGCTTAACTCTTGTTTCCAGAACTGTACTTCCACTTATTAATTTAATCCTTTATAATGAGCCTTACATCAACAAGCCATTAACTGAACACTGCGTTGCATTCCATTGTTttcttataaatgtaaatgttatcttattgttgttgttgtgttttaaagGTGTCACCAGCGTATTCATCATTGTGCAACTCAGCATTTGAATAATGAATGCTccattaatgtgtttgtttactgTTAGTTTCTTAGCTGAATTGAGGAAAACACGCTAATGTCTTAAACTTGATCTTCGCCTATTGAATGTTGCACATATCTATTTCAGTTTGCCTGTTTCTGCAAAGCTCTGCAGCACAATGTTAATTTTAATCACTGTGTAGTTTACTaatgtctttgtttttttattaaagtgcagtttatTGAA

Function

symbol description
cldn12 Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in several structures, including eye; gill; gut; heart; and pleuroperitoneal region. Orthologous to human CLDN12 (claudin 12).

GO:

id name namespace
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-010328-14 Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in several structures, including eye; gill; gut; heart; and pleuroperitoneal region. Orthologous to human CLDN12 (claudin 12).

Ensembl:

ensembl_id ENSDARG00000003927

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00021467 True 3544 mRNA 0.41 3 43227724 43233509

Neighbor

gene id symbol gene type direction distance location
XLOC_010982 slc25a40 coding downstream 88467 43126252 ~ 43139257 (-)
XLOC_010981 NA coding downstream 103497 43119113 ~ 43124227 (-)
XLOC_010980 sema4aa coding downstream 162560 43047972 ~ 43065164 (-)
XLOC_010979 si:dkey-7j14.6 coding downstream 186274 43028079 ~ 43041450 (-)
XLOC_010978 si:dkey-7j14.5 coding downstream 201451 43014417 ~ 43026273 (-)
XLOC_010984 washc5 coding upstream 58200 43291709 ~ 43317927 (-)
XLOC_010985 atad2 coding upstream 85833 43319342 ~ 43344859 (-)
XLOC_010986 FO704821.1 coding upstream 119597 43353106 ~ 43356018 (-)
XLOC_010987 NA coding upstream 125416 43358925 ~ 43368871 (-)
XLOC_010988 oxr1a coding upstream 184123 43417632 ~ 43742343 (-)
XLOC_010626 CR392024.2 misc downstream 22332549 20895112 ~ 20895175 (-)
XLOC_010976 NA non-coding downstream 233832 42974547 ~ 42993892 (-)
XLOC_010975 NA non-coding downstream 253184 42973085 ~ 42974540 (-)
XLOC_010970 CR854827.1 non-coding downstream 353015 42873740 ~ 42874709 (-)
XLOC_010954 BX649388.1 non-coding downstream 1262415 41955855 ~ 41965309 (-)
XLOC_010989 LO018541.1 non-coding upstream 321955 43555464 ~ 43555579 (-)
XLOC_010992 NA non-coding upstream 920975 44154484 ~ 44159865 (-)
XLOC_010993 NA non-coding upstream 947266 44180775 ~ 44295549 (-)

Expression


Co-expression Network