XLOC_010984 (washc5)


Basic Information

Item Value
gene id XLOC_010984
gene name washc5
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 43291709 ~ 43317927 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00021468
CAGTGTGAGGCTCTGTATCTGTATGGAGTCATGTTACTGGTTATCGATCAGAAGATGGAAGGAGAAGTAAGAGAAAGGATGCTGGTGTCCTATTATAGATACAGCGCTGCTCGCTCCTCAGCTGACTCTAACCTAGATGACATCTGCAAGCTTTTGCGTAGCACAGGATACTCCAGCCACCCGGGGGCTAAACGGCCAACAAACTACCCTGAGAGCTACTTCCAGAGAGTTCCCATCAGCTCCACATTCATCAGTATGGTGATTGGCCGCTTGCGCTCTGACGACATCTACAACCAGGTCTCTGCGTATCCTCTGCCGGAGCACCGCAGCACAGCTCTGGCGACTCAGGCCGCTATGCTTTATGTCTGCTTATATTTCACTCCCTCCATCCTGCACACACAACAGGCCAAGATGAGAGAGATCGTGGACAAATACTTCCCTGACAACTGGGTTATAAGCATATACATGGGCATCACAGTGAACTTGGTGGAGGCGTGGGAACCATATAAAGCTGCTAAAATAGCCCTGAACTACACGCTGGACACAGCTAACATCAGAGAACAGGCTGGACGATACGCTGCCAGTGTGGAGACTCTGCGGCCGCAGGTGCAGCAGTTGTTGAAGGAGGGATTCCTGAGGGAAGAAATCATCCTGGACAATATTCCCAAACTGCTCAACTGCCTCCGAGACTGTAATGTTGCCATCCGCTGGCTGATGCTGCACACTGCAGAGTCCGCTTATGATCCAAACAACAAGAGGCTTCGTCAGATCAAAGACCAAGTCATCAACGACTCCAAATACAACCCCAAAATTCTGTTTCAGCTGCTGCTGGACACGGCTCAGTTTGAGTTCATACTCAAAgagATGTTCAAGCAGATGTTGGCAGAGAAGCAGCTGAAGTGGGAGAGCTATAAGAAGGAGGGATCAGAGAGGATGATGGAGCTGGCCGAGGTGTTTTCAGGGGTCAAACCTCTTACCAGAGTGGAGAAAAATGAGAATCTTCAGGCCTGGTTCAGAGAAATCTCCAAACAGATCGAGTCCCTGAACTATGAAGACTCCACGGCTGCCGGCAGGAAGACTGTACAGCTCATTCAGGCTCTGGTGGAGGTCCAAGAGTTTCACCAGCTGGAGTCCAACCTGCAGGTGTGTCAGTTCCTGGCGGACACCCGCAAGTTCCTGCATCAGATGATCCGCACCATCAATATTAAAGAGGAAGTGCTCATCACCATGCAGATAGTGGGGGATTTGTCCTACGCCTGGCAGATCATTGACAGCTTCACCGCAATAATGCAAGAGAGCATCAGAGCAAACCCATCAATGGTGACCAAGCTCAGAGCCACTTTTTTAAAGCTGGCGTCTGCACTGGATCTGCCTCTGCTGCGAATCAACCAGGTCAACAGTCCCGACCTTCTGAGCGTCTCTCAGTTTTACTCCGGGGAGCTGGTGGCATACGTTAGAAAGGTGCTGCAGATCATTCCAGAGAGTATGTTCACCTCACTGGCCAAAATCATCAAGCTGCAGATTCATGACATTATGGAGGTGCCCACACGCTTGGACAAAGACAAACTCAAGGATTACTCTCAGCTCAGTGCCCGCTATGAGGTAGCTAAACTCACTCATGCCATCTCCGTCTTCACCGAAGGTATCCTGATGATGAAGACCACACTTGTTGGGATCATTCAGGTGGATCCCAAGCAGCTTCTGGAGGACGGGATCAGGAAAGAGCTTGTCAAACGTGTAGCGTACGCTTTGCATAAAGGCCTCATCTTCAACCCTAAAGCCAAACCCAGTGAACTGATGCCAAAGCTGAAGGAAATGGCTGCCACTATGGATGGGTTTTATCGCTCGTTTGAGTACATTCAGGATTACGTGAGCATCTACGGCCTGAAGATCTGGCAGGAGGAAGTATCTCGAATAATCAACTACAACGTAGAGCAGGAGTGCAACAGTTTCCTTAGGACAAAgATCCAAGATTGGCAAAGCGTCCACCAGTCCACCCACATTCCCATTCCTAAATATCCATCAGTTGATGAATCCGCCACATTTATTGGACGTCTTTGCAGGGAAATCCTGAGGATCACAGACCCCAAGGTGACGTGTTACATTGACCAGCTCAACACCTGGTATGATCTGAGAACGCATCAGGAAGTGACAAACAACCGGCTGTTTTCTGAGATTCAGGACACGCTGGGAACGTTCGGGCTGAACGGACTGGACAGACTCCTGTGCTTTATGATCGTCAAAGAGCTGCAGAATTTCCTGACAGTTCTTCAGAAGAGCATCCTGAAGGATAAAGCTGTGGTAGACGTCTTCAAAGCTCTGCTGACCGCTGTCAATCCTGTCAAAGGAATTGTGGCAAATGCAAGCAAAGTCTACACAAATGCTGCGGCCAAAACACAGAAGATCTGGAGCCCGTATCTGGAATCCATCATGAAGgTGGGTCAGATGCAGATCTTGAGGCAGCAGATTGCCAACGAGCTCAATTACTCCTGCAAATTTGACTCCAAACATCTCGCTGCAGCGCTGGACAACCTCAACAAGTCCCTGCTGTCCGATATTGAAGCTCATTACCAGGATCCATCACTGCCGTATCCTAAAGAAGACAACACTCTTCTGTATGAGATCACTGCCTACCTGGAGGCTGCAGGAATACACAATCCGCTCAACAAGATCTACATCACAACCAAGCGTCTGCCTTATTTCCCTATCGTCAACTTCCTCTTCCTCATCGCGCAGCTGCCAAAACTGCAGTACAATAAAAGCCAAGGAATGGCGTGCAGAAAGCCTGCAGATGCGCTGGATTGGGCTCCTCTGGTTCTGGGTCTGCTGACGCTCCTCAAACAGTTTCACTCCAGATACACGGAGCAGTTCCTCGCTCTGATTGGACAGTTTATTCGCTCCATAATGGAGCAGTGCACCAGTCAGAAGATTCCAGACATGCCTTCAGATGTAGTCGGAGCGTTAATGTTTCTGGAGGACTATGTGCGTTACACTAAACTGCCAAGAAAGGTGGCAGAGGCTCACGTGCCTAGCTTCATTTTTGATGAATTCAGGACTGTGCTGTAAATCTCATAATGACGAgatcttctctctttctcttaaaGCACTAATGACGTTGAGCGATTCGCATTTTTAACATTTCACTTTTAAAACATGATCATGTTTTGTAGCTGTTACTGACCTCATGTCTGTCTGCTAAGCTAATAAATGCTAATCTATGTTTTGAGA

Function

symbol description
washc5 Acts upstream of or within axonogenesis and heart contraction. Predicted to be located in early endosome. Predicted to be part of WASH complex. Predicted to be active in endosome. Human ortholog(s) of this gene implicated in Ritscher-Schinzel syndrome 1 and hereditary spastic paraplegia 8. Orthologous to human WASHC5 (WASH complex subunit 5).

GO:

id name namespace
GO:0015031 protein transport biological_process
GO:0048666 neuron development biological_process
GO:0007409 axonogenesis biological_process
GO:0060047 heart contraction biological_process
GO:0005768 endosome cellular_component
GO:0005769 early endosome cellular_component
GO:0071203 WASH complex cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-838 Acts upstream of or within axonogenesis and heart contraction. Predicted to be located in early endosome. Predicted to be part of WASH complex. Predicted to be active in endosome. Human ortholog(s) of this gene implicated in Ritscher-Schinzel syndrome 1 and hereditary spastic paraplegia 8. Orthologous to human WASHC5 (WASH complex subunit 5).

Ensembl:

ensembl_id ENSDARG00000101543

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00021468 True 3228 mRNA 0.49 25 43291709 43317927

Neighbor

gene id symbol gene type direction distance location
XLOC_010983 cldn12 coding downstream 58200 43227724 ~ 43233509 (-)
XLOC_010982 slc25a40 coding downstream 152452 43126252 ~ 43139257 (-)
XLOC_010981 NA coding downstream 167482 43119113 ~ 43124227 (-)
XLOC_010980 sema4aa coding downstream 226545 43047972 ~ 43065164 (-)
XLOC_010979 si:dkey-7j14.6 coding downstream 250259 43028079 ~ 43041450 (-)
XLOC_010985 atad2 coding upstream 1415 43319342 ~ 43344859 (-)
XLOC_010986 FO704821.1 coding upstream 35179 43353106 ~ 43356018 (-)
XLOC_010987 NA coding upstream 40998 43358925 ~ 43368871 (-)
XLOC_010988 oxr1a coding upstream 99705 43417632 ~ 43742343 (-)
XLOC_010989 LO018541.1 coding upstream 237537 43555464 ~ 43555579 (-)
XLOC_010626 CR392024.2 misc downstream 22396534 20895112 ~ 20895175 (-)
XLOC_010976 NA non-coding downstream 297817 42974547 ~ 42993892 (-)
XLOC_010975 NA non-coding downstream 317169 42973085 ~ 42974540 (-)
XLOC_010970 CR854827.1 non-coding downstream 417000 42873740 ~ 42874709 (-)
XLOC_010954 BX649388.1 non-coding downstream 1326400 41955855 ~ 41965309 (-)
XLOC_010992 NA non-coding upstream 836557 44154484 ~ 44159865 (-)
XLOC_010993 NA non-coding upstream 862848 44180775 ~ 44295549 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000027_03014464_03027710 E430025E21RIK, STRUMPELLIN, KIAA0196 coding CI01000027 null 3013856 ~ 3027862 (+)
bowfin (Amia calva) AMCG00002707 kiaa0196 coding CM030136.1 CM030136.1 27063761 ~ 27099867 (-)