CI01000095_03763628_03856780


Basic Information

Item Value
gene id CI01000095_03763628_03856780
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000095
NCBI id null
chromosome length 6456983
location 3762950 ~ 3856780 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000095_03763628_03856780.mRNA
AGCTGAATTGGCTCCAATCTGTCGTCAATAAAACATACACAGAGATGAGGAACAGCACAGCAATGCTTAAGTACAACATCATAGTGGGAGGCAGATTTTCCCTCTATGGGGCCACAACTCTGCTGAAGTGTGAAGTGCTGAGGGCCTCAGGGGCCGTGCAGTGGGTTAAAGATGGGCTGCTCCTGGGACCTCAGAGATCGCTGCCTGGCTACCCACGCTACAGCATGACAGGAGACCAGCAGAAAGGCCAGTACCATCTTCAGATTCTCAACGTGAGTTTGGAAGACGACGGCCCCTACGAGTGCCAAGTGGGCCAGTCCGTGAGCAGCCGTGCCATTGTGTCCCGTACAGCCTGGCTCAATGTGCAGACTTTGCTTTCGAGCACTGAGCCAAAAGTTCAGCGAGCGAGAATGAGGGATGAAGTGAAAGACATGCATCGAGGCGGAGTGAGAAAAACACTCTACCTGCTTGCCTGCGGCGAGAAGCACTCTGTAGCCCCGAGCGATGCGGGGAAAGTTGCACAGCAGAGAGTCCCACCCTCACAGCCGTACATCCAGCTGGAGTCTGATGAGCCGTGGGTGGAAGGAGACAAATACACAGTGACCTGCATCGCTCCTGATGCAAAACCTCCAGCAGAAATCACCATGTTCAGAGATGGAGAGGAGCTGACGGAAACTGATTCTTTTACAATGTCAGGCTCACAGGATAAGCTTTTAAACACGCATGCCGAAGTCCTCATCAGGGCACGAAGCTCAGATGACACACGGCGGCTGACGTGTCGAGCGAAGAACCCAGCTAGCCCTCGAGCTCTTGAGACTGGCATGACCATGAGGGTATACTTTCCCCCGCAGGCTCCGGTGATCATAGGATTAGAAAATGAAGAGGTCAGAGCTGGTTCCTTGCTGAGGGTGGTGTGCATGTCGTATGGAGGCAACCCTTTAGCCACTCTGCATTGGATTAAGGGGGATAATGGTGGGATGATGACATTGTCTAACTTGACGCATAAAGTGTCACGTGAGGACAACGGTCTTCCTCTGACTTGTGAGGCATTCAATAAAGGCACCCGCTTCTCTAGTGTTCGATCTGAAGAGCTCATCGTTTACTATCCTCCTCAGAAGGTGTGGTTAGATGCTCCTCCACCAAACGTCTTCTTACACGCTGGTTCAACTCTTCGTTTAGTCTGTTTCTCCAGTGGTGGAAATCCCACAGGTCAGCTGGTGTGGTTCAAGAACAATAAAGTCGTGCCGACCGCATCAAAGCTGGTGTCTTCAGAGCGTGGTGTGTCACGAGATCTCCTTCTCACCCTCCAGCCCAGCGACAATCTAGCCACCTACCGCTGTGACTCCTCAAACAAAGCCAAGAAAGTTATCTCTGCCCAAACCAAACTCAGGGTTCTGTTTCCAGCAGTGAGCGTGAAGATCGTGGCCAAGCAGAAGGAGCTGCGCAAGGGTCAGACACTGGATCTGGACTGCCTGGCTGGCAGCAGCAATCCCACTGCAAATATCAGCTGGAGTTTGGGCCCCATGATGCTGAAAGGAGTTGACCAGGCTCCTAAAAAGGCTGAATTTGGTGGGATGTCCCGAACCAGTAAGCTGTCCCTCACTCTTGATTCTCATCACTGGAAGAAAAGGATCACCTGCCAGGCCTTCAGTAATGTGCTGTCCGAGGGTGTCAACAACTTCTACAGTCTGAATGTGCTCTTTCCTCCAGAGTTTACAGATGACCAACCCGATGAGGTCCAGGTCATTGAGGATGAAACCGCCACGCTTCCTGTCAAAGTCTTGGCCAATCCGGATGAAATCACCTGCGAGTGGATTTTTCAGGGCGAGAAGCTTGTGAAAGAAAGAGATCCTCGTTATCACTTCGACGACTGGACCCTGGAAATCGTGAACGTTTCTCGGCGAGACGGGGGCGATTACATAATAGAGTGTTCCAACGCTGAGGGGAAGAACCGCACAAAACTCAAACTGGATGTACAGCCCCCCTCTTTCTGCCCGTTAGGAACAATGCAGAGGAGGATTGTACACGCCAACACGCCAGAGATTACGCTGGTGGTAATGGCCCACTTGGTTGAGGATATGATCCTCCTGGGGGCAGGGATGGAGATGAGGCAGAAGAACAGCATTGATTCCCCGACTGTTCTTATGAAGTCTGATCCTGTGTCTGTGAACTTGGGAGACACCGCTGACTTACTGTGTGTCGCTGATGCCAACCCCATCACCTCCAGTATGTTTTCGTGGAAGTGGATGGGTGAAGAGGAAGTAGATGATCTAGGAGAGCAGAGTGAAGATGAAGGCACTGGTTTGTTAACTATATATGAAGTGACCCGTGACCGGGCAGGTTTTTACCAGTGTACAGCAGACAACGGCATAGCACCTCCAGGCAGTGTTGAAGGACAGCTCATCGTACGCTTTACTCCAGAGCTTCAGAAGGGGCCGCAGTGGAAGAAGGTGGCCAGCCGTGGGGACGGCAGCAACGATGCAAATGTGGTGTGTCAAGCACAAGGTGTTCCTCGTGTGCACTTCACCTGGGCAAAAAATGGATTCCCTTTGGACTTGGGCAACCCCAGGTACGAGGAGAAGACTGTGGTGACAGGTACCGTCCACACCAGCGTTCTGACTGTCATAAACGTGAGTGCAGCGCTGGACTACGCCATCTTCACCTGCACTGCCCACAATAGCATGGGAGAAGACTCTCTAGACATCCAGCTCCTCAGCACCAGTACGTACAAACAGGAAGTGAGCGGTTTAATGCAAAGTTGGAATGACCACCCCGATCCCCCATCAGACCTGAAGCTGCTCCGTGTCAACCATAACTCTGTGACTCTAGAATGGATGCCTGGGTTTGACGGTGGTTTGACACAGAACTTCCGTGTCAGGTACCAGTGGGCGGGATCGGTGAGTTTCATGTATGTGGACGTGTTTCCTCCGACAGCTACTGTGTATACAGTCACGGGCCTCAACCCTTCAACTGCATACAACTTTTCGGTCAACGCTCTCAATACAATGGGAGAGAGCAGCTATGCAGACAACAACAAAATACTGACGGTCACCACTGCCGATGCGGAGGAAGCTGACGACGGGGTCTCCCCAGCAGACAAGGACCCAGCACTTGCAGGTCGTGGTCTTCCTGTCTATGCCGTGGTGATCCTGGTTGTGGGTGGCCTCCTTTTATTCCTAAATCCATTGAGCTGCTTTCTATTGGCCAGATGGAAAAAAAGAGGGTGGAGCCTGAAAGAAGACACCAGAAGCATTTCACAGGAGACGAAAAGCGAGGAGCAGAGGTCCACGTCGAGCAGCTCAACACGCTACGCGAGCAGAGAGCTTATCAACGCCTCGGCACAACGAACGCTCCTCATCGACAGCAGCTCCGAGCCTGACAGCAGCGTCTATGAGAGCTACGGACGGCAGGAGAATTCTCATTATTACTACAGTCCTGCGCTGTATACTCACTTTGAAGGCCCCGAAGATCTTGATGGCAGACACGGCACAAGCCCTCTCGCTCATGACTATGAGGAGGTGACAGGCTGGGGGACGTACCAGGATCTGCAGGGCTACTCACTGCTGCCCCCTGCTGCCCACTCTGATCCACGAGCACTCTCCACATATCATGAGGGAAGAGTATACGGTAAAGCTGATGTGGACGTAGCAGCCGGAGTTTATGATTCTATGGTGTACAGACGCAGGAGAGACACAGACTTGCCGTTTGAGCTCAGAGGGGAGCTTGTTTAATAAGAGTGGGGCTGGAGAAGGCGTCAGTCTACCAGCTCTATTCTGAGACTGGCTTGGGTTCATGAGTTGATAAAACATGTTTCCTTTTACTTTTTCCTATTATTTGTCTAAAATACATTCTCATTACATTTTAGGCCCTAAATGTTTAATTTGTTCAATAAATAATTAATAATTAATAAAATAATAAAATGGTCGAAATCAGTTTTTTTTTTTTTTTTTGGAGATCTGCTACTTCCATACTGTATGTCCCCCTTTTAAAACATCAAACAGGATTTCCGAACACTCCTCATATCTGTCATTGTTTGGACAAACAGATAGCCCCGTCCCCAAACTTACACCATTGGGTTCTCGGAAATCATCCAACGAATGTCTTACTGTTCAAAAGTTGGTTGTCTTGGTTCTACATATATTTAATCAAAAATACAGAAAAAAACTGTAATATTGTGAAATATTATTACAATCTAAAATCTTTTTTTTTTTTCTATCTGAATATACTTTTAAATGTAATTTATTCCTGTGATGCAAAGCTGATTTTTTTAAAAAAAATATTAAACTTTTATTTTTTTATTTTTTATTTCTGTTTTCAAAAAATATGTCTCTGCTTTTAGGCCTGGGTGTAGAGGAAAATATTTTAACACGACCTTTAAAAATTTGTCCATTTATATATGTTCAAATAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000095_03763628_03856780.mRNA True 4409 mRNA 0.49 30 3762950 3856780

Neighbor

gene id symbol gene type direction distance location
CI01000095_03720995_03743990 NA coding downstream 18788 3720553 ~ 3744162 (-)
CI01000095_03645380_03674104 NA coding downstream 88730 3645279 ~ 3674220 (-)
CI01000095_03598784_03614858 NA coding downstream 148092 3598439 ~ 3614858 (-)
CI01000095_03566220_03574202 NA coding downstream 188529 3565990 ~ 3574421 (-)
CI01000095_03554228_03557044 NA coding downstream 205773 3554188 ~ 3557177 (-)
CI01000095_03937755_03971616 NA coding upstream 79237 3936017 ~ 3972420 (-)
CI01000095_04055806_04081892 NA coding upstream 198782 4055562 ~ 4081892 (-)
CI01000095_04255180_04256500 MON1A coding upstream 398349 4255129 ~ 4256500 (-)
CI01000095_04262102_04292135 NGEF coding upstream 405015 4261795 ~ 4292135 (-)
CI01000095_04320760_04332337 ITM2CA coding upstream 462462 4319242 ~ 4332443 (-)
G310777 NA non-coding downstream 121891 3573620 ~ 3641059 (-)
G310782 NA non-coding downstream 172184 3584377 ~ 3590766 (-)
G310759 NA non-coding downstream 280319 3482430 ~ 3482631 (-)
G310385 NA non-coding downstream 388101 3374432 ~ 3374849 (-)
G310384 NA non-coding downstream 390944 3371806 ~ 3372006 (-)
G310857 NA non-coding upstream 26034 3882814 ~ 3882971 (-)
G310862 NA non-coding upstream 35578 3892358 ~ 3892703 (-)
G310918 NA non-coding upstream 138616 3995396 ~ 3995706 (-)
G310884 NA non-coding upstream 190856 4047636 ~ 4049370 (-)
G310976 NA non-coding upstream 249323 4106103 ~ 4108125 (-)
CI01000095_03528759_03538412 NA other downstream 225717 3528463 ~ 3539055 (-)
G310207 NA other downstream 540282 3192098 ~ 3222668 (-)
G309815 NA other downstream 1031246 2663330 ~ 2731704 (-)
G309753 NA other downstream 2581192 1178597 ~ 1181758 (-)
G309626 NA other downstream 2674784 1085588 ~ 1088166 (-)
G311036 NA other upstream 502881 4357325 ~ 4362626 (-)
G311701 NA other upstream 1292245 5149025 ~ 5154494 (-)
CI01000095_05211660_05234474 NA other upstream 1326813 5211587 ~ 5237234 (-)
CI01000095_05604829_05607020 NA other upstream 1749433 5603542 ~ 5607020 (-)
G312335 NA other upstream 2377605 6234385 ~ 6237845 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_009418 nphs1 coding NC_007126.7 CM002899.2 36553823 ~ 36939655 (-)