XLOC_010987


Basic Information

Item Value
gene id XLOC_010987
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 43358925 ~ 43368871 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00022229
TTCGACTCGGTGGCTACTCTGAATACTTACGTTCCCCGCAAACGACTGCACGCGGTGATGAATCAGCATTAAACTAGCACTGTATTGCCAGAGAGTATAATATGGATGACAGAAACCAATTGACAGTCTTTAAGGGATGACAATGGATACAGGAACTGATGCCAAAATGGAACAGAAGAAACAGAGACGGGGAAACACTGGAGATCACAGGTGACAAGGAAGgctgatggatgctgaAGACAAGTG

Function

GO:

id name namespace
GO:0001704 formation of primary germ layer biological_process
GO:0001706 endoderm formation biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0007492 endoderm development biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0090092 regulation of transmembrane receptor protein serine/threonine kinase signaling pathway biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0035987 endodermal cell differentiation biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00022229 True 246 lncRNA 0.46 3 43358925 43368871

Neighbor

gene id symbol gene type direction distance location
XLOC_010986 FO704821.1 coding downstream 2907 43353106 ~ 43356018 (-)
XLOC_010985 atad2 coding downstream 14066 43319342 ~ 43344859 (-)
XLOC_010984 washc5 coding downstream 40998 43291709 ~ 43317927 (-)
XLOC_010983 cldn12 coding downstream 125416 43227724 ~ 43233509 (-)
XLOC_010982 slc25a40 coding downstream 219668 43126252 ~ 43139257 (-)
XLOC_010988 oxr1a coding upstream 48761 43417632 ~ 43742343 (-)
XLOC_010989 LO018541.1 coding upstream 186593 43555464 ~ 43555579 (-)
XLOC_010990 LO017721.1 coding upstream 310396 43679267 ~ 43679611 (-)
XLOC_010991 zfpm2a coding upstream 450025 43818896 ~ 44127387 (-)
XLOC_010992 NA coding upstream 785613 44154484 ~ 44159865 (-)
XLOC_010626 CR392024.2 misc downstream 22463750 20895112 ~ 20895175 (-)
XLOC_010981 NA non-coding downstream 234698 43119113 ~ 43124227 (-)
XLOC_010976 NA non-coding downstream 365033 42974547 ~ 42993892 (-)
XLOC_010975 NA non-coding downstream 384385 42973085 ~ 42974540 (-)
XLOC_010970 CR854827.1 non-coding downstream 484216 42873740 ~ 42874709 (-)
XLOC_010954 BX649388.1 non-coding downstream 1393616 41955855 ~ 41965309 (-)
XLOC_010993 NA non-coding upstream 811904 44180775 ~ 44295549 (-)
XLOC_011004 NA non-coding upstream 1644043 45012914 ~ 45014480 (-)

Expression


Co-expression Network