CI01000095_04829891_04901481 (ROBO2)


Basic Information

Item Value
gene id CI01000095_04829891_04901481
gene name ROBO2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000095
NCBI id null
chromosome length 6456983
location 4829891 ~ 4901481 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000095_04829891_04901481.mRNA
TTACGTGATGATTTCAGACAGAACCCTACGGACGTGGTGGTGGCTGCTGGAGAGCCGGCCATCTTGGAGTGTGTTCCCCCTCGTGGCCACCCGGAACCCACCATCTACTGGAAGAAAGACAAAGTCAGAATCGACGAGAAGGATGACAGGATCAAGATCCGTGGAGGGAAGCTGATGATCTCCAACACGAGGAAGAGCGACGCTGGCATGTACATCTGTGTGGGTACCAACATGGTCGGCGAGAGAGACAGTGAGACGGCCCAGGTCACCGTGTTTGAGAGGCCCACGTTCCTACGACGGCCCATTAACCAGGTGGTTCTGGAGGAGGAGGCGGTGGAGTTTCGCTGTCAGGTGCAGGGAGACCCACAACCATCCGTCCGCTGGAAAAAAGACGAAATTGACGTCCCCCGTGGGAGGTATGATATTAAATATGATAAAGATGACTATGTGCTGAGGATAAAGAAGGCAGCAGCAAGTGATGAAGGAACCTTCACCTGTGTAGCGGAGAACCGAGTGGGCAAAACAGAGGCGTCCGCCACCCTCACAGTTAGAGGTCAGTTGACTGCACCACAGTTCGTGATCAGGCCACGGGATCAGATTGTAGCGCAGGGACGAACTGCCAGTTTCCCCTGTGAGACGAAAGGGAACCCACAGCCAGCGGTCTTCTGGCAGAAAGAAGGAAGTCAGAACCTTTTGTTTCCAAATCAACCGCAGCAGCCCAACAGTCGTTTCTCGGTGTCGCCCAGTGGAGATCTGACCATCACAGCGGTCCAGCGGGCAGACGCGGGGTACTATATCTGTCAGGCCCTGACGGTGGCGGGCAGCATCCTGGCCAAAGCACAGCTTGAGGTCACAGACGTGTTGACCGATCGTCCTCCCCCCATCATCCGGCAGGGTCCAGCTAACCAGACTCTGGGTGTAGACAGTGTGGCTCTTCTGAGGTGTCATGCATCTGGAGAACCGGTTCCAACCATCAGCTGGCTGAAGGACGGGGTCAGTCTGCTGGGCAAAGACCCTCGTATGTCCCTGCAGGACCTCGGCAGCCTACAGATCAAGGGTTTGCGGCTCTCAGATTCTGGTATCTATACTTGTGTGGCGGCAAGTTCTAGTGGGGAAACATCTTGGAGTGCTTTCTTGGAAGTCAAAGAGTCTGGTAGTCTAGTTGTAGTTAAAGACCGGGATGAGAACGAGCTCCCAGGTCCTCCTTCCAAACCTCAGGTCACCGATGTCACAAAAAACAGTGTGTCATTGTCCTGGCAGCCTGGCCTTCCTGGAGCGTCACCCATCTCATCATATGTTATTGAGGCTTTCAGCCAATCGGTGAGCAACAGCTGGCAGACTGTGGCCGATCATGTCAAGACCACGCAGTACACCATTAAGGGTCTTCGCCCCAACACCATCTACCTGTTCATGGTGCGAGCAGTCAACATCCAGGGCCTGAGCGACCCGAGCCCCATGTCTGAACCCGTCCGCACTCAAGATATAAGTCCTCCAGCACAGGGTGTGGACCACAGACACGTGCAGAAGGAGCTGGGTGAGGTTATTGTACGGCTACACAACCCCGTGGTCCTCAGCCCCACCACCATACAGGTCACATGGACGGTTGACCGCCAGTCTCAGTTCATCCAGGGCTACAGGGTTTTGTACAGGCAGATGTCAGGGCTGTCCTCCCCTGGAGCGTGGCAGAGTCAGGATGTGAAAGTCCCCTCTGAGAGGAGCATGGTGCTCTCAGCTCTGAAGAAAGGCATCGTCTACGAGATCAAAGTCCGTCCGTACTTCAACGAGTTCCAGGGCATGGACAGCGAGTCCCGAACGGCAAGAACAACAGAGGAAGCGCCCAGTGCTCCTCCTCAGCAGGTGACAGTTCTCACAGTGGGCAATCAGAACAGTACATCCATCAGTATCTCATGGGATCCTCCTCCTGCAGAACATCAGAACGGCATCATCCAGGAATATAAGATCTGGTGTTTAGGGAACGAGACCCGTTTCCATGTAAATAAGACTGTGGACGCAGCCATCCGTTCAGTGGTGGTGGGGGGTCTGCAGGCGGGGGTCCAGTACCGGGTGGAGGTGGCCGCCAGCACCAGCGCTGGGGTGGGAGTGAAGAGCGAACCACAAACCATCATTATTGGTAAAGACTTCCGGGATGTGATCATGAGCAGGAACAACAGCATCACGGAGCAGATCACGGACGTGGTGAAGCAGCCCGCCTTCATCGCGGGCATCGGAGGGGCCTGCTGGGTCATTCTCATGGGCTTCAGCATCTGGCTCTACTGGAGGAGAAAGAAGAGAAAGGGTCTTAGCAATTATGCAGGTAGAGACAAGATCCACTTGCGGCTACTCAAATACACATCTCACATGCATGGTTTCTCTTCCCGCAGTCGTCCTGGTCTGCTGAATGCCAGTGATTCGGGGTACCCGTGGCTTGCCGACTCCTGGCCGACCACCAGTCTCCCTGTTAACAGCGGTTCTGGAGGACCCAATGACCTCAACAACTTCGGCCGGGGAGACGTGATGCCCAGTGCCCAGGCTGATAAAACGGGCACCATGCTTTCAGACGGAGCCATTTACAGCAGCATTGACTTCACCACCAAAGGTGGATTTGGCAGTCCAAGCCCCGCCTCCCAGGCTACGCCCTACGCCACAACCCAGATCCTCCATTCCAACAGCATTCATGAGCTGGCCGTCGATCTGCCCGAAGCCCAATGGAAGACCTCCCTACAGGCCAAGCAGGAAATGGCCAGCCTGGGCTACTCACTGCCAGACAAGAACTCCTGCAACAACACACTCCTTTTCATTCCTGACTACCGATTGGCTGACGGATTGTCTAATAGAATGCCACACAACCAATCGCAGGATTTCAGCACCACCAGCTCCCACAACAGCTCAGATCGAAGCAACAGTCTGTCAGGTGGGAAAGGTGGAAAGAAGAAGAAGACCAAAGCAAACGCCAAGCCCACCAAGATGAATGGCTCCAACTGGGCTAACGTTCCACTGCCTCCCCCTCCTGTCCACCCTCTTCCAGGCACGGAGATGGACCACTACGCATCAGAGCACCATGATGGAGGAGGATATGATAGTGATGGTTGGGGCCCGCCATTGCCAGTGCAGACGTACCTCCATCAGGGTTTAGAGGATGAGCTGGAGGAAGAGGAAGAACGGGTGCCCACTCCACCCATAAGGGGCGTGGCCTCTTCCCCTGCAGCAGTTTCCTTTGGCAAACAGTCCACAGCCACACTGAGCCCATCCCCACGTGAAGAAATACAGCCCATGCTCCAGGCCCACCTAGATGAGCTAACCCGCGCTTACCAGTTGGACATGGCTAAACAGGCTTGGCACATGCAGGGTGGGCCTTACCCGCCCCAGGCCCCTGCGCCACCCGTTGGGTACGTTTCCAGCACTCTAGTGTCCGATATCGAGACAGACCTCCCTGACGAAGACGACGATGATGAGGAGGATGAAGGATACGAGATGTCGCCACCAATTAGGGGCATCGAACACACACCAGGCTCCAGCATGGACAACTTGGACAGCTCTGTTACGGATAAAGGTCTACCTCATAGACCTCGTCCCGCTAGCCCGTTTTCCACAGATGGAAGCACGGTGGGCACACACAGCCTTGGTCACCAGCGGGCGCCGAGGCCCACCCGTAAACACAAAGGCCCTGGCACTGCCCCGCACCGCCGCGATGCCAGCGCTGATGATCTGCCTCCACCACCAGAGCCTCCACCCTGCCAGACAGCTCGCGTCCAGGGGACGAGGAATGTGCCCAACCCCTCTGACCGCAAGGCTTCCTCTTTGGAGAGGCAACCCATGATGGGCCTGGAGGAGATGAAGAGTTCCTTGGACCGGCAGGCCCGAACCTCACTGGAGCGCCACCGACAAGCCCAGGACAGACTGGGATCCACAGAGAGAGGAGAGGAGAGCAGAAGAGGACAGAAAAATGGCCCTGTTTCAGAAGAGGCCATATTGCCATACAACAAACCATCATTCCCATCCCCCGGGTGCCACAGCTCGTCTGGGACGGCCTCATCTAAAGGGTCAACGGGTCCTCGTAAAGGAGAAGGGACGAGGGGACAGCACCAGCGCTCCACCACAGAGCAGGGTGAAAGCAGCTACATGGGGACCAACGCGCAGTACTCTGGAGAGTTA

Function

symbol description
robo2 Predicted to enable axon guidance receptor activity. Acts upstream of or within several processes, including axon development; regulation of extent of cell growth; and sensory perception of touch. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including digestive system; dorsal fin; nervous system; spleen; and trigeminal placode. Human ortholog(s) of this gene implicated in vesicoureteral reflux. Orthologous to human ROBO2 (roundabout guidance receptor 2).

GO:

id name namespace
GO:0007507 heart development biological_process

KEGG:

id description
K06754 ROBO2; roundabout, axon guidance receptor 2

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000095_04829891_04901481.mRNA True 4152 mRNA 0.56 24 4829891 4901481

Neighbor

gene id symbol gene type direction distance location
CI01000095_04332781_04341944 CAB39L, CAB39L.L, CAB39, CAB39.L coding downstream 484923 4332759 ~ 4344968 (-)
CI01000095_04320760_04332337 ITM2CA coding downstream 497448 4319242 ~ 4332443 (-)
CI01000095_04262102_04292135 NGEF coding downstream 537756 4261795 ~ 4292135 (-)
CI01000095_04255180_04256500 MON1A coding downstream 573391 4255129 ~ 4256500 (-)
CI01000095_04055806_04081892 NA coding downstream 747999 4055562 ~ 4081892 (-)
CI01000095_04923302_04930194 NA coding upstream 21812 4923293 ~ 4930369 (-)
CI01000095_04948770_04959779 NA coding upstream 47123 4948604 ~ 4960185 (-)
CI01000095_04982165_04986822 NA coding upstream 80441 4981922 ~ 4987360 (-)
CI01000095_05017627_05022990 ROBO1, ROBO3, ROBO2 coding upstream 115882 5017363 ~ 5022990 (-)
CI01000095_05039659_05041786 NA coding upstream 138038 5039519 ~ 5042700 (-)
G311782 NA non-coding downstream 139072 4689084 ~ 4690819 (-)
G311645 NA non-coding downstream 298183 4531445 ~ 4531708 (-)
G311063 NA non-coding downstream 381804 4447880 ~ 4448087 (-)
G311057 NA non-coding downstream 401821 4427869 ~ 4428070 (-)
G311053 NA non-coding downstream 411770 4417896 ~ 4418121 (-)
G311697 NA non-coding upstream 105521 5007002 ~ 5013224 (-)
G311844 NA non-coding upstream 220601 5122082 ~ 5127163 (-)
G311851 NA non-coding upstream 434841 5336322 ~ 5383202 (-)
G311861 NA non-coding upstream 494862 5396343 ~ 5401505 (-)
G311862 NA non-coding upstream 502480 5403961 ~ 5442273 (-)
G311036 NA other downstream 467265 4357325 ~ 4362626 (-)
CI01000095_03528759_03538412 NA other downstream 1292658 3528463 ~ 3539055 (-)
G310207 NA other downstream 1607223 3192098 ~ 3222668 (-)
G309815 NA other downstream 2098187 2663330 ~ 2731704 (-)
G309753 NA other downstream 3648133 1178597 ~ 1181758 (-)
G311701 NA other upstream 247544 5149025 ~ 5154494 (-)
CI01000095_05211660_05234474 NA other upstream 282112 5211587 ~ 5237234 (-)
CI01000095_05604829_05607020 NA other upstream 704732 5603542 ~ 5607020 (-)
G312335 NA other upstream 1332904 6234385 ~ 6237845 (-)
G312368 NA other upstream 1378112 6279593 ~ 6280086 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_008733 robo2 coding NC_007126.7 CM002899.2 39096736 ~ 39228226 (+)
bowfin (Amia calva) AMCG00016015 NA coding CM030122.1 CM030122.1 1009788 ~ 1035222 (+)