Fish Transcriptome and Expression Database

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model fish

XLOC_010989 (LO018541.1)

Basic Information

Item	Value
gene id	XLOC_010989
gene name	LO018541.1
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007127.7
NCBI id	CM002900.2
chromosome length	55266484
location	43555464 ~ 43555579 (-)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00021473
cgctacagccatatcaccctgcagcccaacacCGGTTACGCACTGAAACTAatcagggctgagcctggtcagtactggATGGGcgaccacatgggaaagcaagGTTGCTGTTGGAG

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000107593

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00021473	True	116	rRNA	0.56	1	43555464	43555579

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_010987	NA	coding	downstream	186593	43358925 ~ 43368871 (-)
XLOC_010986	FO704821.1	coding	downstream	199446	43353106 ~ 43356018 (-)
XLOC_010985	atad2	coding	downstream	210605	43319342 ~ 43344859 (-)
XLOC_010984	washc5	coding	downstream	237537	43291709 ~ 43317927 (-)
XLOC_010983	cldn12	coding	downstream	321955	43227724 ~ 43233509 (-)
XLOC_010990	LO017721.1	coding	upstream	123688	43679267 ~ 43679611 (-)
XLOC_010991	zfpm2a	coding	upstream	263317	43818896 ~ 44127387 (-)
XLOC_010992	NA	coding	upstream	598905	44154484 ~ 44159865 (-)
XLOC_010993	NA	coding	upstream	625196	44180775 ~ 44295549 (-)
XLOC_010994	rims2a	coding	upstream	783226	44338805 ~ 44399335 (-)
XLOC_010626	CR392024.2	misc	downstream	22660289	20895112 ~ 20895175 (-)
XLOC_010981	NA	non-coding	downstream	431237	43119113 ~ 43124227 (-)
XLOC_010976	NA	non-coding	downstream	561572	42974547 ~ 42993892 (-)
XLOC_010975	NA	non-coding	downstream	580924	42973085 ~ 42974540 (-)
XLOC_010970	CR854827.1	non-coding	downstream	680755	42873740 ~ 42874709 (-)
XLOC_011004	NA	non-coding	upstream	1457335	45012914 ~ 45014480 (-)
XLOC_011005	BX511252.1	non-coding	upstream	1462845	45018424 ~ 45018540 (-)
XLOC_011010	FP085399.2	non-coding	upstream	1549034	45104613 ~ 45106574 (-)

Expression

Co-expression Network