CI01000095_05555392_05575055


Basic Information

Item Value
gene id CI01000095_05555392_05575055
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000095
NCBI id null
chromosome length 6456983
location 5555088 ~ 5575067 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000095_05555392_05575055.mRNA
AGCTTGTGTGAAATGGTGCCCCCAAGTGGTGCAATATTTTGGTGTTACGCTTCCAGACGCCTGTCCAGACAATGCAGTCCGCATTTGACAATCTACCCTGTTTGGAAAAAATGGCGGCTCTTTCGGTGGAATCGTGTGATTGAAAGCAAAACACAAAGCAAAACATCGACAGTATGCTGTTTAAAGTGCAGTACCAACATCACAAAGTACATAAAGCTTACTGGATCTTCTTATGATTCTGTAATCAAGGATGTCAAGCAGAAGTTTGACATCTCCACAGATCATAAGGTTTATTTAGCTGATGAGACTGGAACAGAAGTAGATGAAGATGTTTTTGCTGACATAATTGAGCAAAAGCCTGACACTCTTTGGATGGTAGTTGATGCTGTGGCTGTAGCAGTTGCATCATCATCAGACACACAGCCATCAGACAGTGATGGTCCTTTTTTCCCACCTAAAAGAGCTCGTTCTGATGACCATTTGCAAGAAGCTAAGGAGCTTGTGAAAAGTGTTTTAGAAAAAAAGCCTGCTGGGGAGAAGATATTTCAGGAATACAAAACAACTGGGAAAATCACAGATTCCACAAGACGGATTCTTGTGAACGCATTAGTTGGAGACATGATTGATAAATATGGGAGTATTCCACCTAAGGAGATCAGAGTTAAATATGCAGTTGGGATTGTGACTCTGTTTCCCTCTCTCAAGGATCCCTATTCCAGAAAAGGCTATGAACACTTCTATGATGCAGAAGGTAACTCGGGATATATAGCCTGGAGACTGAAGACAGTGCAACGTAACAACTGCTGCAGCAGAACCTCTTCTGATGATAAATACTTTGAGTTACTATTTGGAGTGGAGACTGCATCTAAACTTCTGGAGAAGTGGGACTCTACTCTGAAGCAAAAAGTCATTCAAGAAGCCAAAAACCTCACCCAGTCACTGCTTTTGAGTTGTCTGATTCAGTCTGCAGAACACTGCAACACCAGTCAAGGAGACTGGGACAGTGATAGGTCTTCCCTGTTATTGCTGGTCTATCTCCTGCCACCACCTTCTAGCGGAAATAAGAAGTTTGTCAAGATCAGTGTGCTTGAAGCTTTGGATCGCGTATCTTGTTGCAGTTTTGAAGAAGTCCTTGGATCAACACAGACAACACAGCCCTACATCTTGGCAGTTGGCACTTCGAAGAGTAGCATCCATGACTACTACATTGCTGTGGATGAGCGGCTCATCCCCTGCATGGCTAAGTCCTCTCTCTCAGCCTTTGATGAACTTTTCAAAGTTCATTATGTGTTTGGCATTTCATATGGTGCCGCTTTGCACAATATGTTTACCTTTCTTCAGACCACGATTTACAACATTGATTCCTCTAGCACAGTTTCAGAAAAACCGAGCACAAGTGGTCTTGAGAGAACATTGCGAACCCAAGAAATGTGTGCATCTCTAATTGCAAAACTGCAGAGTAGTGGAGTACCCACCAATGTAGTTACATCAGTGGCTGAAAATATGGAGGAACTTGTGTATGAATTGCACTCAAACATTAAAGAGGATGTTGTTAAGTTGATTGAAACTGATGAACACAGGAAAGCTATTGAAGAATATTTTGACAGTCTTGAGAATCCCTTCTCTAAGTTCACAACAGAAACAAAATGGAAAAAGTATTTCTTTGAGACTTGGGGTGTTGTAGAACCAGTTGAAATACCTTTAGGACAGAGATATGATACTAGGCGAAATACAGCTACAGGTACATACGATCAAGTGCCAGTCACTGATAAATTTGTATATGTTCCTTTATTGCAGACTTTAAGTTTCATGTTCCGAAATGAAGAAATCCATAAACATTTTGTACAGCCAAGTGAGGAGAGAGAAATTTTAAGAGAGTTTTGTGATGGTAGCTATTTTAAAGAGCATTCCCTTTTTTCCAAAGAAAATAAGTCTCTTCAAATACAACTTTTTTATGATGATTTTGAAACCTCAAATCCTCTGGGATCTAAACATGGCATGCATAAGGTTGGGAGTATGTATTTTGTTTTGAGAAACCTGTCTCCTAAGGTCAACTCTGCCCTAATGAATATTCATCTTTTGGCACTTTTTCACACACAAGATGTCCAGCGGTATGGCTTTAATGCAATCCTGGAGCCTATTGTGCGTGATATTAAAATTCTTGAGAGTTCTGGAATTAAGTTGCCACTCTCTGAAGAACCAATACGTGGAACAATAGCTCAAGTAACTGGTGATAATTTGGGTGTGCACACACTCTTTGGATTTGTACAGTCATTTAGCGCAAACTATTTTTGCAGGTTTTGTCTAATTGATAAGCTTTCTTCTCAGACCATTTTCTTTGATGACCATCCGGACATCATACTGCGTGACAGAGTTTTACATGCTGAGCACTGTCAAAGCCTCCTTACTGATGATGCTTCACAGTCATCATTTGGTGTCAAAAGAACATGTTTACTTAATGAGTTGGAGTATTTTAATATTTCTGAAAACTATGCAGTGGATATCATGCATGACTTGCTAGAGGGAGTAGCACAGTTAGAGATGAAGTTGCTTTTTGATTATCTGTCGAAGAGCAAAGTTGTGTCCTTACAGTCTGCAAGCAACAGAATTTACTCGTTTAACTATGGTTATGTTGAACGCAAAAACCGACCTACCATGGTTAAATTTGAACAAGCTGGGAATGGGTTGGGTCTCAATGCCATCCAGACATTTTGCTTCATTAGAAATCTGCCACTGATTTTTGGAGATCTGGTTGAAGTAGGAAATAAGCACTGGAGATTACTGCTGCTTCTACTGCAGATAATAAATATTGTGTTTTCTCCAGTCATCTTGAATGGAATGACTGTTTATCTGAAACATTTGATCTGTGAACACCACACGCTGTTCAAAGAACTCTATCCAAGAAATCTTATTCCCAAGCATCACTTCATGATCCACTATCCCCGATGCATCAGGAAGATAGGCCCACTTGTTCATGTTTGGGGGATGCGCTATGAGGCAAATTATCGCTTTTTTAAAAAAAGTGTAAAAAATTTCAAAAACATTACCAAGTCATTAGCACTTAAACATCAGATGGCTATCGCATACCACTGGGAATCTCAGCCTTTCAAGAGTATAGAGTGTGGACCTGTAACAAGCGTTCAGCTTTGTAACTTGCTGGATTGTGAACTGATTGCAGAAAAACTGCAACTTGACATTGACTGTTTTGTTAATACTCTTTCTTGGATTTCTTGTTTTGGGACGGAATACCGCTCGGGACTTCTTGTTTGTTCAGAATTGAAAGATGATATTCCTGTCTTCAGTAAAATTACCGACATATTTGAATTCAATGCTGTTCTGCTGTTTGATACTTTAGCATGGGAAGTGAAAATGCCAAAAGATATTCGTGGCCTACAGGGTTCCTGTCTGGTTATACCATGTTCTTTCCCTTACACATCATACCCACCTGAAAACCCACGTAGAGCTGTATGGTATCAGTGGGTCTCTAAAGGTTATCCTTTAGTTTATGATCCTTTGTATGCAGATGATATCATCAAGAAGTTTAGAGGGAAAACTGATTTATATGGAAACTCAACTTGGGATTGCAGTCTGCTGATGAAAAACCTTGAACAGACTCATCATGGAGAGAAACTTCCACAGCAGACCAGCATCAATATTTATGAAGGTGAAAAGACGGGTGACACCATTACAGTAATATATTCGGCTTTCCACACGTGTCCATACAGCAAACCAAACATCATTCTGAATGGTATAGAAAGATCTGATCAATTAGACAATGAGCATATTAAAGACGGCCTGTGGAAAATCACCCTGACATGCACAAGTATTGTAAAGACAGAAAGCTCAGATATTGAGTGTTCTGTAACATATAATGGTGGCATAACAGTGACAGCTACAAATGACAAAAGTAAAAGGCAACTAAGCAACCTCTCATTCGCCCTGAGAGGAAAGCCCCCTAAAAAGGCCAGGTTACAGGATGCTGGCCCAGAGAAGGTGGCGAAAAGGGTAGGCCCATTAGAGGAGACAGAGGAGGAGACGGTGCAGTGGAAGAGGAATACACCTGGACCAACGATTGTATCCACTTCTACACTTGGCACACATGTGGCTTCAATCTCAGACCTTACCAGGCTTGGGTCATGCTGCAGTCATGCAGCTGCAATATTATTCAAAGTTGAGCTCTATGTTAGGGTGGGAAGGACTGAGAAAGCAGCAGTTACATCTGGAGTGTGCATGTGGAAAGACATCAGCAGGAAAGAAAAGGAGTTCATTGTGCAACGTATCCTAAGAAATGAAGAGTTTTTGAAGGAGGCTTTGCCAAAAGCACAAGACTTCTTTATCTCGAGTGTGTTGCCTGAACTACTGACAAGAAGACATGACCCTGTCTTGGTATCACAGAGAGCCTGCAAATACTGTGAAAGGCCAGATTTTGGAAAAATGATCATCTGTATCAAATGCAGCAACCACGTTCACTACACCTGTGCACACATAAAAAGGAAGCCAGCAGCATGGTTATGTAGGGAATGTCTGAGAGTTGATGTTTGAATGATTACATTTAGGACTGGGAAATGTATTGTATTGTGTTATGAATCTGGTCCATATTACCCAGACCTACATTTGTTTTCCTTCATTTTTTTCCTACATTCATTCTTTCCTACATTTATTCTTATTCTTCACCCAGACCTACATTTATCCTTTTCCTTACATTTTATGTTGTTGTTATTGATTGCTATGTGTCGATGCACTTCTGTTTAAAGTTTTATTTTGTAATGCTATAGTACTTTAATAGCAACTATGTTGCTTGCATACATTTCTCAAATGGTTATTTTGCAATTAAACTATTAATAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000095_05555392_05575055.mRNA True 4846 mRNA 0.40 17 5555088 5575067

Neighbor

gene id symbol gene type direction distance location
CI01000095_05538915_05541548 NA coding downstream 11771 5538607 ~ 5543317 (-)
CI01000095_05378348_05413679 STIM1, STIM1A coding downstream 141409 5377026 ~ 5413679 (-)
CI01000095_05357475_05373425 SEL1L3 coding downstream 181663 5355914 ~ 5373425 (-)
CI01000095_05211660_05234474 NA coding downstream 319958 5211587 ~ 5237234 (-)
CI01000095_05039659_05041786 NA coding downstream 512388 5039519 ~ 5042700 (-)
CI01000095_05587464_05588898 NA coding upstream 12354 5587421 ~ 5589744 (-)
CI01000095_05604829_05607020 NA coding upstream 28475 5603542 ~ 5607020 (-)
CI01000095_05637467_05689858 NA coding upstream 62341 5637408 ~ 5689858 (-)
CI01000095_05731171_05739796 KCNJ13 coding upstream 155320 5730387 ~ 5742070 (-)
CI01000095_05878357_05879271 NA coding upstream 303078 5878145 ~ 5879765 (-)
G311902 NA non-coding downstream 8991 5545874 ~ 5546097 (-)
G311684 NA non-coding downstream 45244 5506809 ~ 5509844 (-)
G311895 NA non-coding downstream 52021 5502848 ~ 5503067 (-)
G311882 NA non-coding downstream 67509 5486331 ~ 5487579 (-)
G311880 NA non-coding downstream 78322 5476441 ~ 5476766 (-)
G311919 NA non-coding upstream 3456 5578523 ~ 5579197 (-)
G311939 NA non-coding upstream 39300 5614367 ~ 5616738 (-)
G311943 NA non-coding upstream 52123 5627190 ~ 5627429 (-)
G311945 NA non-coding upstream 54657 5629724 ~ 5630164 (-)
G311946 NA non-coding upstream 55390 5630457 ~ 5630782 (-)
G311701 NA other downstream 400594 5149025 ~ 5154494 (-)
G311036 NA other downstream 1192462 4357325 ~ 4362626 (-)
CI01000095_03528759_03538412 NA other downstream 2017855 3528463 ~ 3539055 (-)
G310207 NA other downstream 2332420 3192098 ~ 3222668 (-)
G312335 NA other upstream 659318 6234385 ~ 6237845 (-)
G312368 NA other upstream 704526 6279593 ~ 6280086 (-)
CI01000095_06414966_06435096 NA other upstream 838025 6414966 ~ 6435359 (-)
CI01000095_06438476_06449339 USP16 other upstream 862365 6437432 ~ 6449342 (-)

Expression


Co-expression Network