CI01000095_05731171_05739796 (KCNJ13)


Basic Information

Item Value
gene id CI01000095_05731171_05739796
gene name KCNJ13
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000095
NCBI id null
chromosome length 6456983
location 5730387 ~ 5742070 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000095_05731171_05739796.mRNA
AGACGCGGTCACATGAATAACATGCGCTGCAAGCACGCACACAGTTACAAGATCTACTTCACGGTCTACCGTGATTTATCATGTGATGAATTCTCTCATGAAGTTTAGGTTTAGATGTACAGGCAATATTCAGGGTCTTGTCTAATCAAAAGAGTACTTTATGAAGAGGGACCCGGGGTTAAATTGGGTCAGGATGTTCTGGCACCTTCAATTAAAGTATGAAAAAAAATAATAATTTTGTCAATCTAATAACATTTATAACCAAACGTGCCCCCATAGTGTGTGTATATATATATATATATATATATATATATAAAAATATATATAAATCTTAGGGATTCCCTAGTTTCGAAATCCCAAGCCCAAGGGAGAGACCAAGGTCAGGTCAGGCTATAAGATCTATTCTAGTAGGTTGTCAATATGCTAGAATTTAAAAAGATTTAAAGCAAATTTTACCCATCTTTACCAAGGGAATTTTCCCCCATCATGAAAACATCCTGAATTGGAACATTCCCTCTCCTCACCGCAAGAGAACCCGGAGGGCAAGTTAACATTTGTTAAATTAAAATGTGACACTCTCCTCTTTATTACAGTTTAACCTCAAGCGCTGGCATCCAAACACGCTCAAGCACTTTCATTTCGTGTGCCTGCATAATATTTATAGACACATTTTACTTGTTAGTCAGGTTCTCTAGCACACAAAGTAATATCATTAAGCAATGTGACACGATGAAAAAAACATTGTGCTACTGGAGTTCTTTTTTTCTTTTTTATTATTATTTCAGTGCTTTGCTTTTTAGTGTCAGACTAATTACTCGCAGTTGTCTGGTAGAGAGAGAGACAGCGAAAAAAAAGAGTGGATTAAACACACATTCCTGCTGTCCCTTCCACACACACACCCCACTGAGAAACATCACCAATTAAATCACCTGGCAGTTGAAATGGCAGATTTTTTATTGAAATTTTAAAGGAATAGTTCACCCGAAAATCTGTCATTATGCCTCATGTAGTTCTAAACCTAAAAGGAAATTCTTTTTTCATTATGACAGCTGTCAAGTGCCAAAGAAGTGTAAAATAAATAAATAAAATACAAAGTAGCTATGGTGTTACCATTCACAACTTATGCACTATAAGTTTCTTGAAGCAATACAACAGCTTTGTATGAACTGAACAGTGTTATTTCAGCATTATTTATATACTATTATAGTATTTGTTTATATTTTGCTTTTATTTTTATATGTTCAGTTATTTTAATTTTAGTTTGAGTTATAGTAAACTTTAGGTAAGTGTGCTTTTGTCAATTTTATTAGTTCTTTATATTATAAGATTTATAATATAAAATTATATTATATTTATAATTATTCTGTAAGCTTTAATTCATGTTTATTTCAGTTTAAGTCATTTTTAAAGTTTTTCCATCTAATATTTATATTTCAATTTATTTTAGCCCTATTTCACATACCAAAAATGAAAACACTTTTAGTTAAAGCTGCAGTGCGTAAGTTTTTTCTCTTTGTCGCCATCTCTGTTTGAAACCTGCAATTGCAGTTATTTGCGTAATTATCATCTTTACGTGGGTTGTGCATTGGGATGGCTCCTCAGCGTGGATTAATCTAATTTGCTATTTGCTGTCAGTCACCACATCGGTGTGGATACTGTACTTCAGAATCACAGATTCTACATCTTATAAATATGACCAAAATAAGAATTTTCACCGGAAAATGTAATCTGAACGAGTAAGTAACATGTCTGCCACTTTTGATTTGACCAACTGAGAAAAAAGCATTACAATAAATCACGCTGCCGATGATAATTAAATAACAATCGCTTAGCTCGAATCATGTCAAACCCTGCAAATTATTATTATTGTTATACTTTTTCCTCAAATTGTTAATGTTAACAACATCAGCATTGCGTGACTATGTGTATTTAGTGGGTATTAGTGTTACCTGTAGATTTCAATTTCTGTAGGCACTCCGCAGTCCGAAGTCTTTTGCTTCTGACTACGGGTGAATCTCCAGTTGTCACTGATGATTGTCATTTGGACAATCCGCCATCAAAATGATGAGTTTAATTATTGTGGCTGCTGTGAGAAAAGACTATAAGGAATGATGTGTTTTAATTTTCACAGAGGAATTGGAATTTTTTAGAGGTTGAACTATCTCTTGAAGAACATCAGATATTCATATGTACATGTATGGAAATGTGTAGCTGATATCAGCTGTTCTTTGCATAACTTTCCAGGTGTCAGCCGCTTGCCAACTTTTCATCATCATGACAAGCACCACCAGTGACCAAAAGGCTGTCTCCTGCCCTCTGATGACCAAACCTCAACGTCAGCGACTGGTCAGCAAGGACGGGCGGAGCCTGATGCGAGGCAATGCCCCAGGCTACAGAGAGACGTGGTTCGGTGCCCTGCGGGACATGTGGGGGACATGGCTGGCGTTGCGGTGGCGATGGGTGGTGTTGGCTTTCTGTGGCTCCTTCCTGCTTCACTGGTTGCTGTTCGCAGTGTTGTGGTACCTGCTCGCCCGTGTCAATGGAGACCTGGATGTGCCCAACCACGACTCCCCACCGCCTGGCCACGTGCTGTGCGTCAAACACGTGACGGGCTTCACCGCCGCCTTCTCTTTTGCCCTGGAGACGCAGCTGACCATCGGGTACGGCACCATGTACCCCAACGCTGACTGTCCAACTGCCATAGTGCTGCTCGCCCTGCAGATGCTGCTGGGCCTCATGCTGGAGGCCTTCATCACCGGTGCATTTGTGGCAAAGTTCTCCCGCCCTCAGAAGCGCTGTGGTGGGATCCTGTTCAGCCCTCATGCTGTAGTATGCGAGGTCAGAGGTCAACGCTGTTTGATGTTCCGCGTGTGTAACCTGCTTCCAAGGCCTCTGGTGGATGTGTGCGTGAGTGCCATTCTCTACGAAGAACGTGACGATCATGAACTCCATCAAACCGCAATGGATTTCACCATTGATAACCTGGGGTCACGACCTTGCCCCCTCTTTTTGTCACCTTTGACCTTTTATCACCCCATAACTCCATCCAGCCCCCTAAACAATGCCCCAACCAGCCAATCACACTTTGAATTAGTGGTGTTTCTCACCGCCTCTCAGGAGAGCACGGGTTCTGGCTACCACAAGAGGACGTCCTACCTGCCTGACGAGATCCAGTATGGCAGCTGCTTTACCAGGGTGACGTCCCTGCATGGAAAAGGCCGGAACAAAACCGAAAGCATGCGCTATTTTGACACACAGCCCTGTCCGCTCACACTCCCCAACACACACACCACTGACGCACTGGAGAAAGAACACGTGGTGGTCCAGATTAACGGGGAAGGCAGTGACCGGGTGGAGTAGCAGTGGTTGTATTTTTATGCAAGGGTGTATGATTTCATATGAATTCTCCGTTCATAAAAAGGGCATTTCATTTCATGACACAACCTCCAATGTATGACTTTTTTATCCCAAAAGACAACCTGTTAGTTATGATCTGTTATGTCATCTCGTCCCATTAGGAAACCATTTTTGCTGCTAAATGGACACAATGATTCACACTTGCATCCTTCAGTACTGCTGAACACACAATGACTGATGTTTAAGGCCTTGTTTTCATCTGGAAATAAGAGGAATCTCCAGTGTTTTATTATGAGAAATTTTACTGACCATCTTCACCCTGAATCCACTGACACCATCATGTTTGAGCCCTTATTTATTCGGCACCTGGACATTTTCATTGTGTTATCCATCTGCATCCGAGTCAGAGGGGCCCATTTTTAAATGATAAATTATTAAAGCCCTATATGGACAGGTTTCCTCCTTGTCTACAAAGTATTTTTTATCAAAATATATGAATGGTAGAGATAATTCTCCCAAAAAATGAAAACTCTTGTTTCATGTGTTTTTTTTTTTTTTCTCCATACAACAGAAGTAGATAAACACATTACTAATATTATACATTAGTCACTGAAAAAAATACATTTTGTTGTTGTTGAACTGTACTTTTAAAGTGTTCATTAACACCCCTATTAAGTGCCTAATGACAAATTTCAAAAAGTCAACTTTCAAAACAAGTCATGAAATGGACTTTTAGCTCAAGAGACTGAATACTGTACTGAACATTAACAATGATGTAAATAATAAA

Function

symbol description
kcnj13 Predicted to enable inward rectifier potassium channel activity. Acts upstream of or within establishment of pigment granule localization; melanocyte differentiation; and melanocyte migration. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in brain; caudal fin; eye; gonad; and integument. Used to study Leber congenital amaurosis. Human ortholog(s) of this gene implicated in Leber congenital amaurosis 16 and snowflake vitreoretinal degeneration. Orthologous to human KCNJ13 (potassium inwardly rectifying channel subfamily J member 13).

GO:

id name namespace
GO:0043473 pigmentation biological_process

KEGG:

id description
K05006 KCNJ13, KIR7.1; potassium inwardly-rectifying channel subfamily J member 13

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000095_05731171_05739796.mRNA True 4144 mRNA 0.40 2 5730387 5742070

Neighbor

gene id symbol gene type direction distance location
CI01000095_05637467_05689858 NA coding downstream 40529 5637408 ~ 5689858 (-)
CI01000095_05604829_05607020 NA coding downstream 123367 5603542 ~ 5607020 (-)
CI01000095_05587464_05588898 NA coding downstream 140643 5587421 ~ 5589744 (-)
CI01000095_05555392_05575055 NA coding downstream 155320 5555088 ~ 5575067 (-)
CI01000095_05538915_05541548 NA coding downstream 187070 5538607 ~ 5543317 (-)
CI01000095_05878357_05879271 NA coding upstream 136075 5878145 ~ 5879765 (-)
CI01000095_05885040_05886552 NA coding upstream 142644 5884714 ~ 5886555 (-)
CI01000095_06364435_06391469 NA coding upstream 621948 6364018 ~ 6391469 (-)
CI01000095_06406333_06406512 NA coding upstream 663548 6405617 ~ 6407728 (-)
CI01000095_06414966_06435096 NA coding upstream 672896 6414966 ~ 6435359 (-)
G311928 NA non-coding downstream 494 5715087 ~ 5729893 (-)
G311980 NA non-coding downstream 20775 5709411 ~ 5709612 (-)
G311963 NA non-coding downstream 73098 5654547 ~ 5657289 (-)
G311946 NA non-coding downstream 99605 5630457 ~ 5630782 (-)
G311933 NA non-coding upstream 24720 5766790 ~ 5771463 (-)
G312030 NA non-coding upstream 104873 5846943 ~ 5847206 (-)
G312043 NA non-coding upstream 124735 5866805 ~ 5867081 (-)
G312068 NA non-coding upstream 169713 5911783 ~ 5912087 (-)
G312070 NA non-coding upstream 171511 5913581 ~ 5913780 (-)
CI01000095_05211660_05234474 NA other downstream 493153 5211587 ~ 5237234 (-)
G311701 NA other downstream 575893 5149025 ~ 5154494 (-)
G311036 NA other downstream 1367761 4357325 ~ 4362626 (-)
CI01000095_03528759_03538412 NA other downstream 2193154 3528463 ~ 3539055 (-)
G312335 NA other upstream 492315 6234385 ~ 6237845 (-)
G312368 NA other upstream 537523 6279593 ~ 6280086 (-)
CI01000095_06438476_06449339 USP16 other upstream 695362 6437432 ~ 6449342 (-)

Expression


Co-expression Network