CI01000095_06438476_06449339 (USP16)


Basic Information

Item Value
gene id CI01000095_06438476_06449339
gene name USP16
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000095
NCBI id null
chromosome length 6456983
location 6437432 ~ 6449342 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000095_06438476_06449339.mRNA
AAAATGGGTAAAAAGAAGGGGAAAGTTAGAAGTCCTAGAGCAGACAGCAGCATTGAGACACCAGAGGTTTCCTGCACTCACATCCGTAAAGGAATAGACAACGGCTTACTGAAGAAGTCCGATCTGAGTCTGAGCTCGTGCCAAGACTGTGAGCCGAACAAGCCTGTTGAAAACCAGATCTCAGAGGATGAAACTGACAGAGAAAGTCCATCTTTGTGGATGTGCCTGAAATGCGGCCACAGAGGCTGCGGGAGATCAGAGAATCAGCATGCGATGAAGCACTTTGAGACGCCTCGATCCGAGCCACACTGTTTAGTGCTCAGCCTGGACGTCTGGAGTGTCTGGTGTTACATCTGTGATGAAGAAGTTCAGTATTCCAGCACAGGGCAGCTGGCACAGCTGATCAAAAACATAAGAAAACAAGTGCTGACAGATCCTGGCAAGAGGAACTCTAACAAAAAATGTAAGAAGGAAGAGATTCCTGCAGAGCAAACACTGGATGAAGAGAAAGAGAACAAGGAGAACCAGAAGAGCATCTCCAAGCATGATGACAGTCCCAAAAGACAGAAAACAGCAGCAGCAGGAAGCTCTGGTATTGTGTGCGTCAGGGGTCTCAGTAATCTGGGCAACACATGTTTCTTCAATGCAGTCGTGCAGAATTTATCTCAGACGCAGTATTTGCGAGAACTGCTGAACCAGATTTTGGATGAGAAGAGCTGCCTCACCATCATACCTGCACTGTCATCTGAGCTGGAATCTCTTCAGATCCAGCTGGAAAGGCCCGGGTCGCTCACGCTGGCTATGTGTCAGTTACTGAATGAAATCCAGGAGACCAAGAAAGGTGTTGTGACCCCTAAAGAACTCTTCACACAAGTGTGTAAAAAAGCTCCACGCTTTAAAGGCTTTCAGCAGCAGGACAGTCAGGAGCTGCTCCGGTACCTTCTGGACGGCATGAGGGCAGAAGAAGTGAAAAGAGTAAATTCTGGAATTCTGGAGGCTTTGAAAAACTCTGGCAAAAGCTTAGAGGCTGAGCAGATGAAGAAGGTTCTTAAAGAGTACGAGAAAAACGGTGCACACAAGAACTTTGTGGACCGAGTGTTTGGTGGAGAGATGAGCAGCACGGTGATGTGTAAAGAGTGCAAAACTGTGTCTCTGGTGACAGAGATGTTTCTGGATCTTTCTCTTCCAGTAGCTGATGAGGCCTACAGGAAGAAGAATCAGAAGAAAACCCCTCAGTATCGCAGCAGCGTCAGTGATGATGGAGATCGAGACAGCAAAACATCTCTGGTCAATGGGAATGAAGACATGTCTACAGGAACAGGAAGCAAGTACCAGCAGAAGAAAGCCAAGAAACAGGCCAAGAAACAAGCCAAGGTAAAGACACACACTGGTTCAGATGGTGGTAAGAAAGCTGTTTACAGAGATGCACTGAAGCAGATGCTGATCTCTCATCCTCCAGCAGTGCTCACGCTCCACCTGAAGAGATTCCAGCAGGTTGGATACAGTGTTTGTAAGGTGAACAGACATGTGCAGTTTCCTCAGATCCTGGATCTTGCTCCTTTCTGCTCTTTAAACTGCAAGGGTGTGAAGGAGGGCGAGACGCAAGTGCTGTATAGTCTTTATGGCATAGTGGAGCACAGCGGTACCATGCGGTCCGGACACTACACGGCCTACGTTAAATCACGACCCTCCATGCACAATTACGTAGAAAACGGGTTGGCTGCTGGTTGTAACGCTGAGGCCAGTAAAGGATCATGGTTCCACGTCAGCGACAGCAGCGTTCACCCGGTTACAGAGGCCAAAGTGCAGAGTTCCCAAGCCTACCTCCTGTTCTACGAGAAGATCTCATAACCCATATGAGGACTGAGCTTCAAAACAAAGGGCTGCTGGTGCTTCATTCCAACTGCTGGGAAATCATGTTGAAACACAATGCAAATGGATTGAAAACTTGAATCAAAGTTGTTTGTATGAGCATCCTCTTTTATTTTTTTTTCTCTGCATCATCAGCTGCTGTTCAGGGGAAAGTTTTGATTCATGCAAACAAGATGCAGAACTTGCTTGCGATCATTGTATTTTTTTTTTATTTTTTTTTTTTAAATTGAAGTTCATAATGCTCAGTGGAGATTTAAAAGCGATGAAATGTTTTTCTTACCTCTAGATCATGATAGCATGGCTTGATAAAGCTTTGGAGTGGTCATTTGCTTCATACAACGTATCTCAAAGTATCTGATTGTCCTGCACAGTCTTCCAGGACTCTGCTGCCAAGAGAAATAGTCATTTTGAGTGAATCTCATGAAGAAAAGTCATATTTCACCCCAAAATCATAGGTATATAAATATATGTATTTCATTTTTTTATAACAGTTAAGTTTATATCCCCACAATTTTCATTACTGTTTACATTTACTGTTACAAGTCTCATTTTTAATAATGTAATACACTGAATGATCATGGACACATTTTTAAAATTTAGTCAGTGTTAATTAAATTCAGTACAATAAATAATATGATGTAAATATACAGCTGTGCTTAAAATAAATAATGGTTTTATAAATAGGTTTCATTTTCTTTACTCAAAATAATTAAAAATATTTTATTTTGGGGTGAAATAAGAACAAAATATGACCAAGACATGACTTAACAGTCATGAGATTCATCTTTTTTATTTTTAAAATGTAAAACACTTTTTTTTTTTTTTTCCCACCAGAAATATATATATATTGGTACAATTTTATATTGCAATAAA
>TU355146
NTTAGATTTGATAAGATATATTGCTTTTAGTTTTATTTCATTTAATTGTGGAGCCCCATTTATTAGTTTTAGTGTTACTTTTCATTTTAATTATTAGCTTTTCATCAACTCAAAAACCATTTGCCTAGCAAATAGAAAATACTGTTGTACTGTTTTTGTTTTTTTAGTGCACGTTCAGAAAATATTGTGCAGTATAAATGTTTCAGCTATTTTCTAACATCCCATTGCTATATTAAAAATACATTAAAATGTCCTTTAATATTGTCTAACCATATTTTAAAGTTATTGAACATAAAACTTAAAGTTTGTCATAAACCTCAGTTGTGACAGCAGTGTTTTTAAACTGATTTTGTCATGATTCAGGTGGTAAGAAAGCTGTTTACAGAGATGCACTGAAGCAGATGCTGATCTCTCATCCTCCAGCAGTGCTCACGCTCCACCTGAAGAGATTCCAGCAGGTTGGATACAGTGTTTGTAAGGTGAACAGACATGTGCAGTTTCCTCAGATCCTGGATCTTGCTCCTTTCTGCTCTTTAAACTGCAAGGGTGTGAAGGAGGGCGAGACGCAAGTGCTGTATAGTCTTTATGGCATAGTGGAGCACAGCGGTACCATGCGGTCCGGACACTACACGGCCTACGTTAAATCACGACCCTCCATGCACAATTACGTAGAAAACGGGTTGGCTGCTGGTTCAGGTAACGCTGAGGCCAGTAAAGGATCATGGTTCCACGTCAGCGACAGCAGCGTTCACCCGGTTACAGAGGCCAAAGTGCAGAGTTCCCAAGCCTACCTCCTGTTCTACGAGAAGATCTCATAACCCATATGAGGACTGAGCTTCAAAACAAAGGGCTGCTGGTGCTTCATTCCAACTGCTGGGAAATCATGTTGAAACACAATGCAAATGGATTGAAAACTTGAATCAAAGTTGTTTGTATGAGCATCCTCTTTTATTTTTTTTTCTCTGCATCATCAGCTGCTGTTCAGGGGAAAGTTTTGATTCATGCAAACAAGATGCAGAACTTGCTTGCGATCATTGTATTTTTTTTTTATTTTTTTTTTTTAAATTGAAGTTCATAATGCTCAGTGGAGATTTAAAAGCGATGAAATGTTTTTCTTACCTCTAGATCATGATAGCATGGCTTGATAAAGCTTTGGAGTGGTCATTTGCTTCATACAACGTATCTCAAAGTATCTGATTGTCCTGCACAGTCTTCCAGGACTCTGCTGCCAAGAGAAATAGTCATTTTGAGTGAATCTCATGAAGAAAAGTCATATTTCACCCCAAAATCATAGGTATATAAATATATGTATTTCATTTTTTTATAACAGTTAAGTTTATATCCCCACAATTTTCATTACTGTTTACATTTACTGTTACAAGTCTCATTTTTAATAATGTAATACACTGAATGATCATGGACACATTTTTAAAATTTAGTCAGTGTTAATTAAATTCAGTACAATAAATAATATGATGTAAATATACAGCTGTGCTTAAAATAAATAATGGTTTTATAAATAGGTTTCATTTTCTTTACTCAAAATAATTAAAAATATTTTATTTTGGGGTGAAATAAGAACAAAATATGACCAAGACATGACTTAACAGTCATGAGATTCATCTTTTTTATTTTTAAAATGTAAAACACTTTTTTTTTTTTTTTCCCACCAGAAATATATATATATTGGTACAATTTTATATTGCAATAAATACCTTCCTGTCCTCAAAATAATGGCATCATATTCATGAGTCATGAACTTCAACATGAAATTTCAATATATGTACCTCAAGGATCCGTTATTTTATTTAGAACATTCTCCAAAAATCTCACAGAGAGCACTGAAGCTCAAAATAAATGCC

Function

symbol description
usp16 Predicted to enable several functions, including cysteine-type peptidase activity; ubiquitin binding activity; and zinc ion binding activity. Predicted to be involved in several processes, including histone H2A K63-linked deubiquitination; positive regulation of macromolecule biosynthetic process; and protein homotetramerization. Predicted to be located in nucleus. Orthologous to human USP16 (ubiquitin specific peptidase 16).

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K11844 USP16_45; ubiquitin carboxyl-terminal hydrolase 16/45

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000095_06438476_06449339.mRNA False 2745 mRNA 0.42 15 6437582 6449342
TU355146 True 1862 TUCP 0.34 4 6437432 6440801

Neighbor

gene id symbol gene type direction distance location
CI01000095_06414966_06435096 NA coding downstream 2223 6414966 ~ 6435359 (-)
CI01000095_06406333_06406512 NA coding downstream 29854 6405617 ~ 6407728 (-)
CI01000095_06364435_06391469 NA coding downstream 46113 6364018 ~ 6391469 (-)
CI01000095_05885040_05886552 NA coding downstream 551027 5884714 ~ 5886555 (-)
CI01000095_05878357_05879271 NA coding downstream 557817 5878145 ~ 5879765 (-)
G312443 NA non-coding downstream 20865 6416342 ~ 6416717 (-)
G312433 NA non-coding downstream 87867 6349324 ~ 6349715 (-)
G312400 NA non-coding downstream 134625 6302753 ~ 6302957 (-)
G312396 NA non-coding downstream 136842 6300533 ~ 6300740 (-)
G312368 NA other downstream 157496 6279593 ~ 6280086 (-)
G312335 NA other downstream 199737 6234385 ~ 6237845 (-)
CI01000095_05604829_05607020 NA other downstream 828809 5603542 ~ 5607020 (-)
CI01000095_05211660_05234474 NA other downstream 1200348 5211587 ~ 5237234 (-)

Expression


Co-expression Network