Gene
RNA
| Item | Value |
|---|---|
| gene id | G308000 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000095 |
| NCBI id | null |
| chromosome length | 6456983 |
| location | 30845 ~ 31109 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU350007 | True | 265 | lncRNA | 0.39 | 1 | 30845 | 31109 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000095_00166019_00170944 | NA | coding | upstream | 134910 | 166019 ~ 170944 (-) |
| CI01000095_00170941_00172566 | NA | coding | upstream | 139832 | 170941 ~ 172566 (-) |
| CI01000095_00173095_00181309 | NA | coding | upstream | 141986 | 173095 ~ 181309 (-) |
| CI01000095_00183587_00185442 | HMGB1B, HMGB1, HMGB1A | coding | upstream | 152110 | 183219 ~ 186905 (-) |
| CI01000095_00219520_00237347 | HSPH1 | coding | upstream | 188327 | 219436 ~ 237432 (-) |
| G307996 | NA | non-coding | downstream | 2146 | 28364 ~ 28699 (-) |
| G308004 | NA | non-coding | upstream | 1315 | 32424 ~ 32702 (-) |
| G308017 | NA | non-coding | upstream | 13824 | 44933 ~ 45215 (-) |
| G308032 | NA | non-coding | upstream | 27257 | 58366 ~ 58575 (-) |
| G309253 | NA | non-coding | upstream | 45654 | 76763 ~ 77189 (-) |
| G309272 | NA | non-coding | upstream | 60533 | 91642 ~ 98251 (-) |
| G309626 | NA | other | upstream | 1054479 | 1085588 ~ 1088166 (-) |
| G309753 | NA | other | upstream | 1147488 | 1178597 ~ 1181758 (-) |
| G309815 | NA | other | upstream | 2632221 | 2663330 ~ 2731704 (-) |
| G310207 | NA | other | upstream | 3160989 | 3192098 ~ 3222668 (-) |
| CI01000095_03528759_03538412 | NA | other | upstream | 3499803 | 3528463 ~ 3539055 (-) |
