G309270


Basic Information

Item Value
gene id G309270
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000095
NCBI id null
chromosome length 6456983
location 91953 ~ 98477 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU351531
TCCACAACTCCAGGCGGGGGTGAATTATCATGCTGCCCACTTGAGACAGAAGGTCCTGTCTGATGGGGATCTCCATGGGGGAGCCGTCTAGAAGAGACACTAGGTCTGCAAATCAAACTCGGGTCGGCCAGAACGGGGCTATCAGTATGAGATGGACCCTGTCCCGGCGAACCCTCTCCAGAACTCCTGGGAGCAGAGCGATCGGGGAAAAAGTGTACAGACGTAACCTCGGCCACATCTGCACCATGGCATCCAACCCCAGAGGGGCTGGATGAGTCAGAGAGCACCACAGTGGGCAAAGAGATGTTTCTTTTGAAGCAAATAGGTCAACTTCTGCACGACCGAAGTTTTTCCAAATGAGC
>TU351532
TCCACAACTCCAGGCGGGGGTGAATTATCATGCTGCCCACTTGAGACAGAAGGTCCTGTCTGATGGGGATCTCCATGGGGGAGCCGTCTAGAAGAGACACTAGGTCTGCAAATCAAACTCGGGTCGGCCAGAACGGGGCTATCAGTATGAGATGGACCCTGTCCCGGCGAACCCTCTCCAGAACTCCTGGGAGCAGAGCGATCGGGGAAAAAGTGTACAGACGTAACCTCGGCCACATCTGCACCATGGCATCCAACCCCAGAGGGGCTGGATGAGTCAGAGAGCACCACAGTGGGCAAAGAGATGTTTCTTTTGAAGCAAATAGGTCAACTTCTGCACGACCGAAGTTTTTCCAAATGAGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU351531 False 362 lncRNA 0.54 2 91953 98477
TU351532 True 362 lncRNA 0.54 2 91953 98477

Neighbor

gene id symbol gene type direction distance location
CI01000095_00166019_00170944 NA coding upstream 67542 166019 ~ 170944 (-)
CI01000095_00170941_00172566 NA coding upstream 72464 170941 ~ 172566 (-)
CI01000095_00173095_00181309 NA coding upstream 74618 173095 ~ 181309 (-)
CI01000095_00183587_00185442 HMGB1B, HMGB1, HMGB1A coding upstream 84742 183219 ~ 186905 (-)
CI01000095_00219520_00237347 HSPH1 coding upstream 120959 219436 ~ 237432 (-)
G309253 NA non-coding downstream 14764 76763 ~ 77189 (-)
G308032 NA non-coding downstream 33378 58366 ~ 58575 (-)
G308017 NA non-coding downstream 46738 44933 ~ 45215 (-)
G308004 NA non-coding downstream 59251 32424 ~ 32702 (-)
G308000 NA non-coding downstream 60844 30845 ~ 31109 (-)
G309293 NA non-coding upstream 55115 153592 ~ 153846 (-)
G309295 NA non-coding upstream 89317 187794 ~ 187995 (-)
G309301 NA non-coding upstream 96451 194928 ~ 195145 (-)
G309302 NA non-coding upstream 98727 197204 ~ 197769 (-)
G309304 NA non-coding upstream 103591 202068 ~ 202936 (-)
G309626 NA other upstream 987111 1085588 ~ 1088166 (-)
G309753 NA other upstream 1080120 1178597 ~ 1181758 (-)
G309815 NA other upstream 2564853 2663330 ~ 2731704 (-)
G310207 NA other upstream 3093621 3192098 ~ 3222668 (-)
CI01000095_03528759_03538412 NA other upstream 3432435 3528463 ~ 3539055 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
striped catfish (Pangasianodon hypophthalmus) G240890 NA non-coding NC_047609.1 CM018555.1 14465770 ~ 14465993 (-)