XLOC_010994 (rims2a)


Basic Information

Item Value
gene id XLOC_010994
gene name rims2a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 44338805 ~ 44399335 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00021486
AAATGCTTCAGACTCTAAAAAATACCACGCCAGCCGGGGTAAATGCGGTTTAGGATCACTCAGTCTGCAATCTCAGCTCTAGAGCACCTTCTCCTTTCAGCCCGACTGCAAACATGGGTAGACAGAGCCATGATGCCACCTCGACAGCGGGCAGCGGCAGTCGCATGCAGCGCTCCCAGAGCCGAATGAGTCTGTCAGCCTCTTTCGAAGCTCTAGCTGTTTATTTCCCATGCATGAATTCTTTCGATGAGGAGGATGGAGAAGCAGGAGGGAAGAAGCTGCGCAGCACCATCCAGAGGAGCACAGAGACGGGACTGGCTGTGGAGATGAGGAGCCGAATGACAAGACAAGCCAGCCGAGAATCCACTGACGGCAGCATGAACAGCTACAGCTCTGAGGGAAACCTGATCTTCCCTGGAGTGAGACTCTCTTCAGACAGTCAGTTCAGTGATTTCCTGGATGGACTTGGCCCAGCCCAGCTGGTGGGCAGACAGACATTAGCCACACCTCCTATGGGTGACATTCAGATCGGGATGGTGGAAAAGAAAGGAGCCCTAGAGGTGGAGGTGATCCGAGCCCGAGGCCTTGTGGGAAAACCAGGTTCAAAGGCACTGCCAGCCCCTTACGTAAAGGTGTATCTACTGGAGAACGGCGCCTGcatagccaaaaagaaaacaaaagtagcAAGAAAAACACTGGATCCTCTTTACCAGCAGCAGCTGTCATTCGAAGAGTCTCCAGGAGGAAAAGTTTTACagATTATAGTGTGGGGAGATTATGGACGTATGGACCACAAATCTTTTATGGGAGCTGCTCAGATACTGTTAGATGATCTGGACTTGTCCAACATGGTtattggctggtttaagctgtttccCCCATCTTCACTGGTCGACCCAACCTTAGCCCCTTTGACCAGAAGAGCTTCCCAGACATCTCTGGACAGTGGGTCCGGGCCATTTGCTCGCTCGTAGCAGTTTTCTGAAATCTAGCGTTATTGTAGCAGCCATTGGGTGGAGTTTGAGATTGGCGACAGGTCCTGTTCCCCGGTAAACACTGCATGCTtgatgttgtgtgttcagagctTGTTTCTTAGGGGAGAAAAAAGCGGACCTGTTTTTGCTCGCAAAAAAAATAACGACGCACATATTGTGCGCACAAAAGAGCGCCCTCTTAAGGGAAAGGACGTGAGGAAGCTGGAAACGGGCTCCTTTGCTCGAGGAACGTCACAATTCCTGCTTTTAGATCCTATTTGAAGCCATTGGAGTCGAGTTTGAACTGAGAACCGAGACGTCGAGTTCTTCAGAAGCCCTTTTTTTTGCAACAGGGTGGAGCGTCAACTTTCGTTTTCCATTAATGTTTCTTTTAATGTCGATGTATTTGTATCTACATGGGCTAACAGTGTTCCTTGGGTCAAGCCATGCCAACAGACCCAGAAATGTACAcgcaaaaactaaacaaaaaaaaaaaaaa
>TCONS_00021487
CtcagcagacagacagaaagtGTAGAGCTGGAGGAGTCTGAGGAGGACAAGAACCAGAGGACGCTCTCTGAGACCGACCTCAGGCAAATGGGAACGGCGGCTGGAGGCAACATGACCAAGAGCACCAGCATCGGCGGAGACATGTGCAGCCTGGAGAAGACCGACGGCAGCCAGTCGGACACGGCCGTAAGCCTGGTGGGAACGGACGACAAGAAACGGCGCTCCAGCATCGGAGCTAAGATGGCGGCAGTGGTGGGATTGAGCCGAAAGAGTCGCAGCGCTTCACAGCTCGGTCAGACAGAAGCAGGAGGGAAGAAGCTGCGCAGCACCATCCAGAGGAGCACAGAGACGGGACTGGCTGTGGAGATGAGGAGCCGAATGACAAGACAAGCCAGCCGAGAATCCACTGACGGCAGCATGAACAGCTACAGCTCTGAGGGAAACCTGATCTTCCCTGGAGTGAGACTCTCTTCAGACAGTCAGTTCAGTGATTTCCTGGATGGACTTGGCCCAGCCCAGCTGGTGGGCAGACAGACATTAGCCACACCTCCTATGGGTGACATTCAGATCGGGATGGTGGAAAAGAAAGGAGCCCTAGAGGTGGAGGTGATCCGAGCCCGAGGCCTTGTGGGAAAACCAGGTTCAAAGGCACTGCCAGCCCCTTACGTAAAGGTGTATCTACTGGAGAACGGCGCCTGcatagccaaaaagaaaacaaaagtagcAAGAAAAACACTGGATCCTCTTTACCAGCAGCAGCTGTCATTCGAAGAGTCTCCAGGAGGAAAAGTTTTACagATTATAGTGTGGGGAGATTATGGACGTATGGACCACAAATCTTTTATGGGAGCTGCTCAGATACTGTTAGATGATCTGGACTTGTCCAACATGGTtattggctggtttaagctgtttccCCCATCTTCACTGGTCGACCCAACCTTAGCCCCTTTGACCAGAAGAGCTTCCCAGACATCTCTGGACAGTGGGTCCGGGCCATTTGCTCGCTCGTAGCAGTTTTCTGAAATCTAGCGTTATTGTAGCAGCCATTGGGTGGAGTTTGAGATTGGCGACAGGTCCTGTTCCCCGGTAAACACTGCATGCTtgatgttgtgtgttcagagctTGTTTCTTAGGGGAGAAAAAAGCGGACCTGTTTTTGCTCGCAAAAAAAATAACGACGCACATATTGTGCGCACAAAAGAGCGCCCTCTTAAGGGAAAGGACGTGAGGAAGCTGGAAACGGGCTCCTTTGCTCGAGGAACGTCACAATTCCTGCTTTTAGATCCTATTTGAAGCCATTGGAGTCGAGTTTGAACTGAGAACCGAGACGTCGAGTTCTTCAGAAGCCCTTTTTTTTGCAACAGGGTGGAGCGTCAACTTTCGTTTTCCATTAATGTTTCTTTTAATGTCGATGTATTTGTATCTACATGGGCTAACAGTGTTCCTTGGGTCAAGCCATGCCAACAGACCCAGAAATGTACAcgcaaaaactaaacaaaaaaaaaaaaaa

Function

symbol description
rims2a Predicted to enable transmembrane transporter binding activity. Predicted to be involved in calcium ion-regulated exocytosis of neurotransmitter; modulation of chemical synaptic transmission; and regulation of membrane potential. Predicted to act upstream of or within exocytosis. Predicted to be located in membrane. Predicted to be active in cytoskeleton of presynaptic active zone and presynaptic membrane. Is expressed in nervous system and pancreatic system. Orthologous to human RIMS2 (regulating synaptic membrane exocytosis 2).

GO:

id name namespace
GO:0006887 exocytosis biological_process
GO:0042391 regulation of membrane potential biological_process
GO:0048167 regulation of synaptic plasticity biological_process
GO:0048791 calcium ion-regulated exocytosis of neurotransmitter biological_process
GO:0017157 regulation of exocytosis biological_process
GO:2000300 regulation of synaptic vesicle exocytosis biological_process
GO:0050806 positive regulation of synaptic transmission biological_process
GO:0098831 presynaptic active zone cytoplasmic component cellular_component
GO:0042734 presynaptic membrane cellular_component
GO:0048786 presynaptic active zone cellular_component
GO:0048788 cytoskeleton of presynaptic active zone cellular_component
GO:0045202 synapse cellular_component
GO:0016020 membrane cellular_component
GO:0044325 ion channel binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1656 Predicted to enable transmembrane transporter binding activity. Predicted to be involved in calcium ion-regulated exocytosis of neurotransmitter; modulation of chemical synaptic transmission; and regulation of membrane potential. Predicted to act upstream of or within exocytosis. Predicted to be located in membrane. Predicted to be active in cytoskeleton of presynaptic active zone and presynaptic membrane. Is expressed in nervous system and pancreatic system. Orthologous to human RIMS2 (regulating synaptic membrane exocytosis 2).

Ensembl:

ensembl_id ENSDARG00000101606

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00021486 False 1473 mRNA 0.49 6 44338805 44349845
TCONS_00021487 True 1513 mRNA 0.51 7 44338805 44399335

Neighbor

gene id symbol gene type direction distance location
XLOC_010993 NA coding downstream 43256 44180775 ~ 44295549 (-)
XLOC_010992 NA coding downstream 178940 44154484 ~ 44159865 (-)
XLOC_010991 zfpm2a coding downstream 211418 43818896 ~ 44127387 (-)
XLOC_010988 oxr1a coding downstream 596462 43417632 ~ 43742343 (-)
XLOC_010995 NA coding upstream 36118 44435453 ~ 44649053 (-)
XLOC_010996 dcaf13 coding upstream 253931 44653266 ~ 44673851 (-)
XLOC_010997 si:ch211-151m7.6 coding upstream 280324 44679659 ~ 44709832 (-)
XLOC_010998 zmp:0000000951 coding upstream 355464 44754799 ~ 44763813 (-)
XLOC_010999 arhgap33 coding upstream 388996 44788331 ~ 44878255 (-)
XLOC_010626 CR392024.2 misc downstream 23443630 20895112 ~ 20895175 (-)
XLOC_010989 LO018541.1 non-coding downstream 783226 43555464 ~ 43555579 (-)
XLOC_010987 NA non-coding downstream 969934 43358925 ~ 43368871 (-)
XLOC_011004 NA non-coding upstream 613579 45012914 ~ 45014480 (-)
XLOC_011005 BX511252.1 non-coding upstream 619089 45018424 ~ 45018540 (-)
XLOC_011010 FP085399.2 non-coding upstream 705278 45104613 ~ 45106574 (-)
XLOC_011011 FP085399.3 non-coding upstream 731586 45130921 ~ 45134479 (-)
XLOC_011012 FP085399.5 non-coding upstream 741523 45140858 ~ 45144372 (-)

Expression


Co-expression Network