G309404


Basic Information

Item Value
gene id G309404
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000095
NCBI id null
chromosome length 6456983
location 436305 ~ 443056 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU351696
GAGCGAGGGACATTTTCATCAACTTATCTAATCTATCAGAGATGCAAATTGACTTATTCATTCCCAGACAGCCAGACAAGCCAAAAACCACATCAAGCTTTTACTGAGGTCACTTTGAATGCTTTAAAGGCCAGACAGATCCATGAATCTATTTTAATAATTCAAAAAGTCAGATTAATTTTTGGCACAGCTGGGCAGCTAAAAGGCTGTCTCTTGTCTTTCCGCTGGGACATCTGTCCACAGACTGGACGTGGGGACGTGAGCGTACGGGGGGGGGGGGGGGGGGGGGGATCTTCACCCCTCTGAAGTGACTTTATCAGAGGTTTTTCCAGAGGTTCGGCCATGACAATGCGTATTTTGCGCTCAGAGATGGTGGTGAAGTTGGCGAAGAGGCTCTTGAGCACGTACTCGCCCGGCCGGCTCTCTGGGTCCACACTAATGGGCATCATGGCGGGCGGTCCCTTCTCACCCTGTGAGCAGCAAACCGGGGGGACGGGAGGCTTGCTGTACCCTGGTGAAGCCAGGCCCTTGATGAAGTTCACCATGCTGGTTTTATTCCAGCACATGACTGAGCTATCCATAGTGGGGGAGAAGTATATTTGATCCAGTTTTCCAAACCTCACACGTCCTTATCAATAATTCCAATGATGGCGGGACCTTCTCCTGTTCACCACCTGCCCCATACTGTAACGGTCCCACCGCGAGCTGAAGCAAAAGTCAGAAAATTGGGTGATAACAAATCCACATGTGTGCTCACTTCTTCTGAAGGCTCTCTATTGCAGTGTAAACGTCCACTGCCTCTCGAGACTGAAGGTCAGGCTGGAATTTTTAGCTGAGGTCTGGGCAAGT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU351696 True 849 lncRNA 0.50 3 436305 443056

Neighbor

gene id symbol gene type direction distance location
CI01000095_00219520_00237347 HSPH1 coding downstream 198873 219436 ~ 237432 (-)
CI01000095_00183587_00185442 HMGB1B, HMGB1, HMGB1A coding downstream 249400 183219 ~ 186905 (-)
CI01000095_00173095_00181309 NA coding downstream 254996 173095 ~ 181309 (-)
CI01000095_00170941_00172566 NA coding downstream 263739 170941 ~ 172566 (-)
CI01000095_00166019_00170944 NA coding downstream 265361 166019 ~ 170944 (-)
CI01000095_00790125_00813901 NA coding upstream 346406 789462 ~ 814216 (-)
CI01000095_00914578_00997684 FREM2B, FREM2 coding upstream 471522 914578 ~ 997684 (-)
CI01000095_01200809_01460128 NBEA, NBEAB, NBEAA coding upstream 757753 1200809 ~ 1460128 (-)
CI01000095_01537561_01538239 NA coding upstream 1094490 1537546 ~ 1539065 (-)
CI01000095_01543090_01636658 DLC1, STARD13B coding upstream 1100034 1543090 ~ 1636658 (-)
G309361 NA non-coding downstream 26052 350711 ~ 410253 (-)
G309346 NA non-coding downstream 30361 313682 ~ 405944 (-)
G309366 NA non-coding downstream 78952 356575 ~ 357353 (-)
G309329 NA non-coding downstream 160318 274059 ~ 275987 (-)
G309313 NA non-coding downstream 221460 214554 ~ 214845 (-)
G309430 NA non-coding upstream 43227 486283 ~ 486708 (-)
G309467 NA non-coding upstream 83688 526744 ~ 526958 (-)
G309468 NA non-coding upstream 86109 529165 ~ 529402 (-)
G309471 NA non-coding upstream 89770 532826 ~ 533047 (-)
G309472 NA non-coding upstream 90592 533648 ~ 592955 (-)
G309626 NA other upstream 642532 1085588 ~ 1088166 (-)
G309753 NA other upstream 735541 1178597 ~ 1181758 (-)
G309815 NA other upstream 2220274 2663330 ~ 2731704 (-)
G310207 NA other upstream 2749042 3192098 ~ 3222668 (-)
CI01000095_03528759_03538412 NA other upstream 3087856 3528463 ~ 3539055 (-)

Expression


Co-expression Network