G309476


Basic Information

Item Value
gene id G309476
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000095
NCBI id null
chromosome length 6456983
location 563688 ~ 577317 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU351785
GTAGAACTTGCTGCCAAACACAGGTTCATTATCATTAATATCCTGTAGGATCACTTTGACCACAGCTGTAGAAGACAGTGGCGGTCGACCCCTGTCGGTGGCAACAATGGTTACACTCGGTATTGGGTCCGTTTCATAATCTAGCTGGGTCAGGGTGGTGAGAATACCAGTAACTGGGTCAACACTGAACCACTCTGAATGACTTCCTTCAGTCTGTAGGATGCTGTACTGAACATCCCCGTTGGGTCCTTGGTCTTTGTCCCGTGCTGTAACCTGTACAACAAAACTTCCCGGAAAGGCCACCTCTGGAATAACCTGGGTATATTCCTGCTGGTCAAACAAAGGTGGGTTGTCATTAACATCTGTGACCTGAATGGTAAACGAAGACTCTGCCCGTAACGGAGGGGTGCCAGAATCTGTGGCCATGACTCTGAGTTCATAGTGGTCTTGCTCCTCACGATCAAGTATCTGATCTACACAGATGAGATAAATGATGCTGTCTTTGGTGGTTAAAGCAAACTTCCCATCGCCCCCCTCCAAAGATACATTCACATTGGCATATTCTCCATAATCAGGGTCTGTGACTGAAATCCTAGCCACATACTGGCCGGGCTGCGCTCCTTCAGAGATCCGTGGAGAACCATCCTCACTGAGGAAGATGATGGTCATGGTGGGCTGGTTGTCGTTGTAGTCTCGCACCTGGATGGTCACAAAGGCATTAGTGATCTCTGGTTGACTGGCATTGTCCCTAGCCTGTACCACAAGCTCGTGGACTCTTCTCATCTCATAATCCAAAGGCTTGTTCAGAGTGATAACTCCAGTTCGAGAGTCAATGACAAAGTAGTGATCAGGATCACTCTGTCTTCTGTTGATGTCATAGAGCACCAACCCATTGTCACCTTCATCAGCATCTGAAGCAAACACTTGCAGTATATTGTTGCCAGGTTGAAGGTTCTCGGAGATCACTGCATGGTAGCGACTCTGGTTGAAGACTGGGGCATTGTCGTTGATGTCCTGCACAGTCACGTCCAGGATCATCTGTCCTGTCCTCTTGGGTGAACCACCATCAAATGCTTCCAAGAGTAGAGTATACGAAGATCTTGTCTCTCTGTCCAAGACCGCATTGACCACCAAATCCAAGTAGAGGACTTTGTTGGATCCTCGTTTGGTTTCAAGAAGAAAAGCTTGTCCTACATTTCCATCCGTTATGATGTAACCTTGCGTAGTGAGCTGGTCCTCATCTGCATCCACAGCCGGCTCAAGAGGAAACTTGGTACCTATGGTTGTCTGTTCTGGGATTTTAAATGTGGCTCTTTTTCTGGGGAACACTGGTGCGTGATCGTTGATGTCATTGACTAAGATGGTGACTTCTACTGTTATACCGGTCATGGTGACTGCTATGAAGCTGTAACTGTCCCGTGCTTCCCGATCCAAGACCTTTGCGGTTTTTATGATCCCTGTACTCTCGTCGATGTCCAGATCAGTGCCAACACCCGTACCCTGATGATCTGAGATGAAATAGTGGGTTGCAGTCATGTCAGGTGGGAGGCCAGCACTGATGTCACCTACTACAGTTCCTGCTGGCTGTTCCTCATCTAGTTGGAGCTGCAATGTTCCTGGCACCATGGATGAGTGGATGGTCTTGAAGTGTAGTGCCACATAGAGGATCACCAATATCCACCACTTCAAAGTCCTGTTTTGAGGCAATGGATCCATAATTGTCCTTCCTTCTCTCTTCATAGAAAATTCTTCTTACAAAACACTCATCTGTTCGTGCTTTTCAACGAGAGAGATCCAGTCTGTGCCAACGTAACTGCAGGAAAACCACCCAAAAATGAAATGTCGTTTCAAAAAATCCGTTTTAGATTATATCCATCTTCCCACAAGTTAACTTTCGCGTGCCACAATAACTTCCACAAGTATATTTCCAGTTTTTGTATTTTCCTGTTGTTGTCAAGCTCAGAATACGCTGCACCAATTCAAAAGGGCTCTGTCCTCCAAACTGAGCGCAGCAGACAGGATGAAATCAGTCCGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU351785 True 2035 lncRNA 0.47 2 563688 577317

Neighbor

gene id symbol gene type direction distance location
CI01000095_00219520_00237347 HSPH1 coding downstream 326256 219436 ~ 237432 (-)
CI01000095_00183587_00185442 HMGB1B, HMGB1, HMGB1A coding downstream 376783 183219 ~ 186905 (-)
CI01000095_00173095_00181309 NA coding downstream 382379 173095 ~ 181309 (-)
CI01000095_00170941_00172566 NA coding downstream 391122 170941 ~ 172566 (-)
CI01000095_00166019_00170944 NA coding downstream 392744 166019 ~ 170944 (-)
CI01000095_00790125_00813901 NA coding upstream 212145 789462 ~ 814216 (-)
CI01000095_00914578_00997684 FREM2B, FREM2 coding upstream 337261 914578 ~ 997684 (-)
CI01000095_01200809_01460128 NBEA, NBEAB, NBEAA coding upstream 623492 1200809 ~ 1460128 (-)
CI01000095_01537561_01538239 NA coding upstream 960229 1537546 ~ 1539065 (-)
CI01000095_01543090_01636658 DLC1, STARD13B coding upstream 965773 1543090 ~ 1636658 (-)
G309471 NA non-coding downstream 30641 532826 ~ 533047 (-)
G309468 NA non-coding downstream 34286 529165 ~ 529402 (-)
G309467 NA non-coding downstream 36730 526744 ~ 526958 (-)
G309430 NA non-coding downstream 76980 486283 ~ 486708 (-)
G309416 NA non-coding downstream 125484 437781 ~ 438204 (-)
G309487 NA non-coding upstream 6186 583503 ~ 584193 (-)
G309558 NA non-coding upstream 138056 715373 ~ 715585 (-)
G309572 NA non-coding upstream 169461 746778 ~ 751608 (-)
G309601 NA non-coding upstream 242037 819354 ~ 819581 (-)
G309656 NA non-coding upstream 331942 909259 ~ 927787 (-)
G309626 NA other upstream 508271 1085588 ~ 1088166 (-)
G309753 NA other upstream 601280 1178597 ~ 1181758 (-)
G309815 NA other upstream 2086013 2663330 ~ 2731704 (-)
G310207 NA other upstream 2614781 3192098 ~ 3222668 (-)
CI01000095_03528759_03538412 NA other upstream 2953595 3528463 ~ 3539055 (-)

Expression


Co-expression Network