XLOC_010996 (dcaf13)


Basic Information

Item Value
gene id XLOC_010996
gene name dcaf13
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 44653266 ~ 44673851 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00021490
ATTCTGCGATTACAGAACCCGGATGTGTTTCTGCTAAAGTGACGTCAAATTAGTGCGCGGTCCGTCATACAAACACATGGTCTTGCGTTTTCTCAAAGGCAACATATATCTAAACAAGATTTTTATGTATGATTTTGCTGTTTATAACCCGCTGGAATGAAAGTTAAAGTGCTTTGCAGAAACCCGGACGATTATGTTCGAGAGACAACCAGAGATATACAGCGAGTACCCAGGAACTATGACCCGACCCTGCACCCTTTTGAGGTGCCCAGAGAATATACCAGAGCCCTGAATGCCACCAAACTGGAGAGGGTGTTTGCCAAACCTTTTGTGGCCTCGCTCGACGGGCACAGAGATGGCATCAGCTGCATTAGCAAACACGCCAAAAGCCTGTCCACAGTCATATCTGGCGCCTGCGATGGCGAGGTGAAAGTTTGGAATCTTCCCAAGCGAGAGTGTACGAGGACGGTTCAGGCTCACGAAGGATTTGTGCGAGGAATCTGCTCCCGCTTCTGTGGCACCTCGTTTTTCACGGTAGGAGATGATAAAACTATCAAACAGTGGAACATGGAGGCTCCAGGATATGGAGTTCGGGAGGAACCAATTAACACCATTCTGGGGAAGGCGGTGTTCACTGGCATTGACCACCACCAAAGGGAGGGCACGTTCGTTACCTGCGGGCAGACGGTGGATATCTGGGATGAACAGAGAAGCAGCCCCGTCTTGTCCTTCAGCTGGGGTGTGGACAGTTTCAGCAGCGTTCGCTACAACCCTGTGGAGACTGACCTTCTCGCCAGCTGTGCATCAGACAGAAGTATTGTGTTGTATGACACCAGAGAATCTGCACCACTCAGAAAGGTTATCATGCAGCTGAGAAGCAATACGCTTTGCTGGAACCCAATGGAAGCATATTATTTTACCTGCGCAAACGAAGACTACAACCTTTATACATATGACATAAGGAATCTGGATGTTCCTGTGACTGTCCACATGGATCATGTATCCGCTGTGCTGGATGTGGATTATTCACCTACAGGGAGAGAGTTTGTATCCGCCAGCTTTGACAAAACCGTCCGCATCTTTCCTAAAGACAAAGGCCACAGCAGGGAGGTGTACCACACCAAACGTATGCAGCACGTCATCTGTGTGAAATGGTCGGCTGACAGCAAATTCATCATGAGCGGCTCAGACGAGATGAACATTCGCCTGTGGAAGGCCAACGCCTCGGAGAAGCTCGGAGTGCTTTCTACCCGAGAAAAGACTGCCGCAAACTACAACAAAAAGCTGATACAGAAATTCCAGCACCATCCACAGGTGAGACGCATTGCCCGCCATCGCCACCTGCCCAGAGACGTCCTGAAGCAGAAGAGAGAGCTGAAGGAAATGAAGGAAGCACGCCGCAGGAAGGAACAAAACGTCCGCAAACACAGCAAGCCAGGATCTGTTCCCCTGCTGACAGAAAAGGAGAAACATGTGGTGAAGGTTGTGGAGTAAGAGACCAATTAAAGAGGTGCTTTCGGTGGATGGGTTTTTGTTCTCCACACTCGGACATGCTCCAGAATATTCCACCCTTTGGCCTCTTCTTTACTTCTATACTAAGATTATGACcgtcatatatacacacagactttCGGTATATTGCAGGTTTCTGTTAAACACCCATTTCTAATTAATTTTACATGGACTCTGTACTAGAGTTGCTGTTGTTAGActatgaacaataaaaaaaagtttactctG
>TCONS_00021491
aaaaaatagagcacttacggacatatatttaaatgtttaaatcagcCACAGAAATATCTGCATGTGCGTTATTTTGACTGCACACTGAGGGAAACTGAAATTAACCCGGATATATAGTACAGTACTTTTAATCTCCAGTTGTTGGGGGTTCAAAAACCACAAGGGCTATATGCGACTATACAGCAATAGTAGTGgctcaaaaatatatgttttgttggCCGAATCTCCTTATATTTTTGACATCAGTTACAGGCCGGATGGAGGAGAAGGTGGGGCGCAAATGGCCCATGGttcggcagtttgagacccctgttttaaagaatgttggaaacaagaAGCCATTAGCATCCATATTAGGAACATTCttcataaaatttaatttaatttacatggcattaaataaaactaCTAAATCAATGGCTTGCGCTTTCCATGATTCTTCAATGTATCTTTCTTTCTCTACatcagaagaatgaaactcaagATTGGAATAAGAATGAGTAACAAGTATGATGAcaatttatttttgggtgaactacccttttAAGCATTGCTTTATTTCaagtgaaagagttttttttttttttactatccaCGTGGTTTATGTGAATAATAGATTTTCAATTACTTTCTTTAGATTTCACATGCAAAATGTCCTGTTGTCTTTTGCAGACTGACCTTCTCGCCAGCTGTGCATCAGACAGAAGTATTGTGTTGTATGACACCAGAGAATCTGCACCACTCAGAAAGGTTATCATGCAGCTGAGAAGCAATACGCTTTGCTGGAA
>TCONS_00021492
CTCAAAGGCAACATATATCTAAACAAGATTTTTATGTATGATTTTGCTGTTTATAACCCGCTGGAATGAAAGTTAAAGTGCTTTGCAGAAACCCGGACGATTATGTTCGAGAGACAACCAGAGATATACAGCGAGGTATGTAAACAAGCATCGACCGTATGAAGGTGGTCTACAGGTAAGATGTACATTAACTGCAGTAACTTATGTTCCTTATGTAGTACCCAGGAACTATGACCCGACCCTGCACCCTTTTGAGGTGCCCAGAGAATATACCAGAGCCCTGAATGCCACCAAACTGGAGAGGGTGTTTGCCAAACCTTTTGTGGCCTCGCTCGACGGGCACAGAGATGGCATCAGCTGCATTAGCAAACACGCCAAAAGCCTGTCCACAGTCATATCTGGCGCCTGCGATGGCGAGGTGAAAGTTTGGAATCTTCCCAAGCGAGAGTGTACGAGGACGGTTCAGGCTCACGAAGGATTTGTGCGAGGAATCTGCTCCCGCTTCTGTGGCACCTCGTTTTTCACGGTAGGAGATGATAAAACTATCAAACAGTGGAACATGGAGGCTCCAGGATATGGAGTTCGGGAGGAACCAATTAACACCATTCTGGGGAAGGCGGTGTTCACTGGCATTGACCACCACCAAAGGGAGGGCACGTTCGTTACCTGCGGGCAGACGGTGGATATCTGGGAT

Function

symbol description
dcaf13 Predicted to be involved in maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA). Predicted to act upstream of or within rRNA processing. Predicted to be located in nucleus. Predicted to be part of Cul4-RING E3 ubiquitin ligase complex and small-subunit processome. Predicted to be active in nucleolus. Orthologous to human DCAF13 (DDB1 and CUL4 associated factor 13).

GO:

id name namespace
GO:0006364 rRNA processing biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) biological_process
GO:0016567 protein ubiquitination biological_process
GO:0032040 small-subunit processome cellular_component
GO:0005634 nucleus cellular_component
GO:0080008 Cul4-RING E3 ubiquitin ligase complex cellular_component
GO:0005730 nucleolus cellular_component
GO:0003674 molecular_function molecular_function

KEGG:

id description
ko03009 Ribosome biogenesis
ko04121 Ubiquitin system

ZFIN:

id description
ZDB-GENE-040426-703 Predicted to be involved in maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA). Predicted to act upstream of or within rRNA processing. Predicted to be located in nucleus. Predicted to be part of Cul4-RING E3 ubiquitin ligase complex and small-subunit processome. Predicted to be active in nucleolus. Orthologous to human DCAF13 (DDB1 and CUL4 associated factor 13).

Ensembl:

ensembl_id ENSDARG00000002267

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00021490 False 1740 mRNA 0.48 11 44653266 44673851
TCONS_00021491 False 788 lncRNA 0.36 2 44665604 44668760
TCONS_00021492 True 694 lncRNA 0.49 4 44669393 44673760

Neighbor

gene id symbol gene type direction distance location
XLOC_010995 NA coding downstream 4213 44435453 ~ 44649053 (-)
XLOC_010994 rims2a coding downstream 253931 44338805 ~ 44399335 (-)
XLOC_010993 NA coding downstream 357717 44180775 ~ 44295549 (-)
XLOC_010992 NA coding downstream 493401 44154484 ~ 44159865 (-)
XLOC_010991 zfpm2a coding downstream 525879 43818896 ~ 44127387 (-)
XLOC_010997 si:ch211-151m7.6 coding upstream 5808 44679659 ~ 44709832 (-)
XLOC_010998 zmp:0000000951 coding upstream 80948 44754799 ~ 44763813 (-)
XLOC_010999 arhgap33 coding upstream 114480 44788331 ~ 44878255 (-)
XLOC_011000 arhgap33 coding upstream 199693 44873544 ~ 44877319 (-)
XLOC_011001 rbm42 coding upstream 207978 44881829 ~ 44900306 (-)
XLOC_010626 CR392024.2 misc downstream 23758091 20895112 ~ 20895175 (-)
XLOC_010988 oxr1a non-coding downstream 910923 43417632 ~ 43742343 (-)
XLOC_010989 LO018541.1 non-coding downstream 1097687 43555464 ~ 43555579 (-)
XLOC_010987 NA non-coding downstream 1284395 43358925 ~ 43368871 (-)
XLOC_011004 NA non-coding upstream 339063 45012914 ~ 45014480 (-)
XLOC_011005 BX511252.1 non-coding upstream 344573 45018424 ~ 45018540 (-)
XLOC_011010 FP085399.2 non-coding upstream 430762 45104613 ~ 45106574 (-)
XLOC_011011 FP085399.3 non-coding upstream 457070 45130921 ~ 45134479 (-)
XLOC_011012 FP085399.5 non-coding upstream 467007 45140858 ~ 45144372 (-)

Expression


Co-expression Network