G309572


Basic Information

Item Value
gene id G309572
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000095
NCBI id null
chromosome length 6456983
location 746778 ~ 751608 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU351894
AACAAATGTATTGCTCATTGTTGGTTCATGTTAGTTAATACATTAACTAATGTTGACAAATGAGACCTTATTGTAAAGTGTTACCGACCTTTTAATGTTTTTGAAAGAAGTCTCTTATGCTCACAAAGGCTGCATTTATTTGAACAAACATACAGTAAAAACAGTAATACCGTGAAATATTATAATTTAGGTTTTTAAATGTCATTTATTCCTGTGATGGCAAAGCTGAATTTTTAGCAGCCATTACACCAGTCTTCAGTGTCACATGATCCTTCAGAAATCATTCTAATAACATTAATTTGGTGCTCAAGAAACATTTATTATTAGTATCAAGTTTGGAAACAGTTGTGCTGCTTAAGATTTTGTGGAAACTGTGATACATTTTTTTTAAGATTCTTTGATGAAAAGAAAGTTCAAAAGAACAGCACTTGTTACAGACAGAAATCTTTACTGTCACTTTTAATCAACTCAATACGTCCTTGCTGAATAAAAGTACTCATTTCTTTAAAAAGAAATTAGTGAATCCAAACTTTTGAACAGTAGTGTATGTTGTATTTCTTCATTTCATGGTAAAGAAATTCTTTGTTTGAATTTCCAGGTTTAAACTGGATTTTCAGGGTGTGTTCACACTTGTCATGTTCGGTTCGATTAAAATAAACCCTGGTGTGATTGCTCTGTTAGTGCGGTTCATTTGAACGTGTGAACGCTGCCATCCGAACCCTGGTGCGCACCAAACAAGCGGACCGAGACTGCTGAAAAGATGGGTCTCGGTCCGCTTCCAAATGAACTCAGGTGCGGTTCGAATGATATATGAACGCAACACGGACAGACATGTAAACGAACCAAAAACAGAAAGATGAGACCCTAAAAAGGACAGAATCCTCACGCATATCGGTTTTTCTTGTAATAGTCGCAAATTTGCCCATCACAGGCATCAGACGCGCGTCTCCACGCAGCAGATCTTTTGTGTGCGTGACGGAGGGATTTTGACTCCTTTACACATTTAATAAGCTCTTCACGAGTTCCCAGCTGGCCAAAATACCATCATATGCAGGCTACACACACACAACAAGCGCATTTACCTCAGCACACAGCATTGTTTTGGATGTTCGGTAAGTTCCGTCTCAAAATAGGCAATACGTCATAAAATCCGACCAATCAGGTTGTGAATGTATCCCTATGACTTTAGGTTCGGTATCTTTTGGTTCGGTGATAAAATTGCCAATCTGAACGCTAATCAGACCAGGACTTTTTTTTTTTTTTGGTCCAGACCAAACAAACCAAATGAACCGAACTACAAGTGTGAACGCACCCTCAATGTGGTGTCAGACTTTTGGACTCCACTGTGTATCATTTCAAAGATGTTTACAAAAGTAGTGTTGATTTCATTAGGTTTTTAAAAAAAAACTGCTAAGATTGCTTAGAGCACCTACAATGTATGTTTACAATTACCTGAACTGCTCGTTTGAACTTCTCACAGAAAGAGTAGAAAATGGAGCAACAATCCTCTAGTTTGAACTGAGTGGGGTCCTCACAGAAATACTCTGCCACCGAATCACTCACAGCAGAAAGGGTCTTGAAGGCCTCCTCGGTCTCCTTTACCCTGGTTTCTGCATTCAGCAGAAAATCCCTCATCTGTTCTTCCAGATCTGGCTGTTTACTAGCATTCTGCTTTGACACCTGGACTTTACTCGCTTCCTTTTGGAAATCAGACTCAATTTCCTGTTTATGAATCCTTGCTGCATCTCCGATGTGCTGTAGTTGCTCTGTGAACTTCAGCAGCGACGCATCTATCTTCTGGGCTTGCATCACAACATAGTGCATGAGGTTCATTCCAGGCTTGTTGGCTTTGGTATCCGCTAGTTTGAGAAGAGACGTTATCCGGAATCCCACCGCGCTGCCAGCGTACCCTCCAGAGTTCATGTAGTTCCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU351894 True 1932 lncRNA 0.40 5 746778 751608

Neighbor

gene id symbol gene type direction distance location
CI01000095_00219520_00237347 HSPH1 coding downstream 509346 219436 ~ 237432 (-)
CI01000095_00183587_00185442 HMGB1B, HMGB1, HMGB1A coding downstream 559873 183219 ~ 186905 (-)
CI01000095_00173095_00181309 NA coding downstream 565469 173095 ~ 181309 (-)
CI01000095_00170941_00172566 NA coding downstream 574212 170941 ~ 172566 (-)
CI01000095_00166019_00170944 NA coding downstream 575834 166019 ~ 170944 (-)
CI01000095_00790125_00813901 NA coding upstream 37854 789462 ~ 814216 (-)
CI01000095_00914578_00997684 FREM2B, FREM2 coding upstream 162970 914578 ~ 997684 (-)
CI01000095_01200809_01460128 NBEA, NBEAB, NBEAA coding upstream 449201 1200809 ~ 1460128 (-)
CI01000095_01537561_01538239 NA coding upstream 785938 1537546 ~ 1539065 (-)
CI01000095_01543090_01636658 DLC1, STARD13B coding upstream 791482 1543090 ~ 1636658 (-)
G309558 NA non-coding downstream 31193 715373 ~ 715585 (-)
G309472 NA non-coding downstream 153823 533648 ~ 592955 (-)
G309487 NA non-coding downstream 162585 583503 ~ 584193 (-)
G309476 NA non-coding downstream 169461 563688 ~ 577317 (-)
G309471 NA non-coding downstream 213731 532826 ~ 533047 (-)
G309601 NA non-coding upstream 67746 819354 ~ 819581 (-)
G309656 NA non-coding upstream 157651 909259 ~ 927787 (-)
G309657 NA non-coding upstream 158730 910338 ~ 929767 (-)
G309662 NA non-coding upstream 185665 937273 ~ 938107 (-)
G309692 NA non-coding upstream 274054 1025662 ~ 1025899 (-)
G309626 NA other upstream 333980 1085588 ~ 1088166 (-)
G309753 NA other upstream 426989 1178597 ~ 1181758 (-)
G309815 NA other upstream 1911722 2663330 ~ 2731704 (-)
G310207 NA other upstream 2440490 3192098 ~ 3222668 (-)
CI01000095_03528759_03538412 NA other upstream 2779304 3528463 ~ 3539055 (-)

Expression


Co-expression Network