G309656


Basic Information

Item Value
gene id G309656
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000095
NCBI id null
chromosome length 6456983
location 909259 ~ 927787 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU352003
NNTGCATACGTCTGTGCGTAGTGGTTCTTGAAGCACTGACTCCAGCTGCAGTCCACTCTTTGTGAATCTCCCCCACAGTTTTGAATGGGTTTTGTTTCACAATCCTCTCCAGGGTGTGGTTATCCCTATTGCTTGTACACTTTTTTTTTTTTCTACCACATCTTTTCCTTCCCTTCGCCTCTCTATTAATGTGCTTGGACGTAGAGCTCTGTGAACAGCCAGCCTCTTTTGCAATGACCTTTTGTGTCTTGCCCTCCTTGTGCAAGGTGTCAATGGTCGTCTTTTGGACAACTGTCAAGTCAGCAGTCTTCCCCATGATTGTGTAGCCTACAGAACTAGACTGAGAGACCATTTAAAGGCCTTTGCAGGTGTTTTGAGTTAATTAGTTGATTAGAGTGTGGCACCAGGTGTCTTCAATATTGAACCTTTTCACAATATTGTAATTTTCTGAGATACTGAATTTGGGATTTTCCTTAGTTGTAAGTTATAATCATC
>TU352002
NNTGCATACGTCTGTGCGTAGTGGTTCTTGAAGCACTGACTCCAGCTGCAGTCCACTCTTTGTGAATCTCCCCCACAGTTTTGAATGGGTTTTGTTTCACAATCCTCTCCAGGGTGCGGTTATCCCTATTGCTTGTACACTTTTTTCTACCACATCTTTTCCTTCCCTTCGCCTCTCTATTAATGTGCTTGGACGT
>TU352006
NNTGCATACGTCTGTGCGTAGTGGTTCTTGAAGCACTGACTCCAGCTGCAGTCCACTCTTTGTGAATCTCCCCCACAGTTTTGAATGGGTTTTGTTTCACAATCCTCTCCAGGGTGTGGTTATCCCTATTGCTTGTACACTTTTTTTTTTTTTTCTACCACATCTTTTCCTTCCCTTCGCCTCTCTATTAATGTGCTTGGACGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU352003 False 495 lncRNA 0.42 2 909259 927787
TU352002 False 196 lncRNA 0.46 2 909552 927787
TU352006 True 204 lncRNA 0.44 2 909552 927787

Neighbor

gene id symbol gene type direction distance location
CI01000095_00790125_00813901 NA coding downstream 95043 789462 ~ 814216 (-)
CI01000095_00219520_00237347 HSPH1 coding downstream 671827 219436 ~ 237432 (-)
CI01000095_00183587_00185442 HMGB1B, HMGB1, HMGB1A coding downstream 722354 183219 ~ 186905 (-)
CI01000095_00173095_00181309 NA coding downstream 727950 173095 ~ 181309 (-)
CI01000095_00170941_00172566 NA coding downstream 736693 170941 ~ 172566 (-)
CI01000095_01200809_01460128 NBEA, NBEAB, NBEAA coding upstream 273022 1200809 ~ 1460128 (-)
CI01000095_01537561_01538239 NA coding upstream 609759 1537546 ~ 1539065 (-)
CI01000095_01543090_01636658 DLC1, STARD13B coding upstream 615303 1543090 ~ 1636658 (-)
CI01000095_01639699_01643103 NA coding upstream 711798 1639585 ~ 1643326 (-)
CI01000095_01675024_01682552 NA coding upstream 746174 1673961 ~ 1682780 (-)
G309601 NA non-coding downstream 89678 819354 ~ 819581 (-)
G309572 NA non-coding downstream 157651 746778 ~ 751608 (-)
G309558 NA non-coding downstream 193674 715373 ~ 715585 (-)
G309472 NA non-coding downstream 316304 533648 ~ 592955 (-)
G309662 NA non-coding upstream 9486 937273 ~ 938107 (-)
G309692 NA non-coding upstream 97875 1025662 ~ 1025899 (-)
G309684 NA non-coding upstream 136393 1064180 ~ 1064747 (-)
G309710 NA non-coding upstream 140148 1067935 ~ 1068323 (-)
G309622 NA non-coding upstream 168437 1096224 ~ 1135455 (-)
G309626 NA other upstream 157801 1085588 ~ 1088166 (-)
G309753 NA other upstream 250810 1178597 ~ 1181758 (-)
G309815 NA other upstream 1735543 2663330 ~ 2731704 (-)
G310207 NA other upstream 2264311 3192098 ~ 3222668 (-)
CI01000095_03528759_03538412 NA other upstream 2603125 3528463 ~ 3539055 (-)

Expression


Co-expression Network